PDB: 1in4 Compound: holliday junction DNA helicase ruvb Classification: DNA BINDING PROTEIN Entry date in PDB: 2001-08-08 Resolution [Å]: 1.60 R-Factor: 0.234

CHAIN: A SWISS-PROT/TREMBL: Q56313    KEYWORD: 3D-structure    ATP-binding    Complete proteome    DNA recombination    DNA repair    Helicase    SOS response    SCOP: a.4.5.11 All alpha proteins    DNA/RNA-binding 3-helical bundle    "Winged helix" DNA-binding domain    Helicase DNA-binding domain    Holliday junction helicase RuvB    Thermotoga maritima SCOP: c.37.1.20 Alpha and beta proteins (a/b)    P-loop containing nucleoside triphosphate hydrolases    P-loop containing nucleoside triphosphate hydrolases    Extended AAA-ATPase domain    Holliday junction helicase RuvB    Thermotoga maritima GO:  ATP binding    DNA binding    Holliday junction helicase activity    defense response    defense response to pathogen    DNA recombination    DNA repair

Image Source: PDB

Loops in ArchDB40 clusters

1in4_A_64 - HE => SUBCLASS : 1.1.2
1in4_A_165 - HE => SUBCLASS : 2.3.7
1in4_A_298 - HE => SUBCLASS : 2.4.1
1in4_A_90 - HE => SUBCLASS : 5.2.1
1in4_A_313 - EH => SUBCLASS : 1.1.3
1in4_A_173 - EH => SUBCLASS : 5.16.1
1in4_A_54 - EH => SUBCLASS : 6.1.1
1in4_A_105 - EH => SUBCLASS : 6.29.1
1in4_A_182 - HH => SUBCLASS : 5.1.1
1in4_A_216 - HH => SUBCLASS : 6.2.1

Loops in ArchDB95 clusters

1in4_A_313 - EH => SUBCLASS : 1.1.7
1in4_A_173 - EH => SUBCLASS : 5.40.1
1in4_A_54 - EH => SUBCLASS : 6.1.1
1in4_A_105 - EH => SUBCLASS : 6.46.1
1in4_A_182 - HH => SUBCLASS : 5.1.1
1in4_A_216 - HH => SUBCLASS : 6.3.1
1in4_A_64 - HE => SUBCLASS : 1.2.3
1in4_A_64 - HE => SUBCLASS : 2.1.2
1in4_A_165 - HE => SUBCLASS : 2.2.11
1in4_A_298 - HE => SUBCLASS : 2.4.1
1in4_A_64 - HE => SUBCLASS : 3.2.1
1in4_A_90 - HE => SUBCLASS : 5.4.1

Loops not clustered in ArchDB

1in4_A_79 - EH
1in4_A_152 - EH
1in4_A_307 - HA
1in4_A_31 - HE
1in4_A_116 - HE
1in4_A_279 - HH
1in4_A_259 - HH
1in4_A_240 - HH
1in4_A_202 - HH
1in4_A_290 - HH

1in5 A - percentage of sequence identity: 99
1in6 A - percentage of sequence identity: 99
1in7 A - percentage of sequence identity: 99
1in8 A - percentage of sequence identity: 99
1j7k A - percentage of sequence identity: 99