PDB: 1iz6 Compound: initiation factor 5a Classification: BIOSYNTHETIC PROTEIN Entry date in PDB: 2003-01-28 Resolution [Å]: 2.00 R-Factor: 0.185

CHAIN: A SWISS-PROT/TREMBL: O50089    KEYWORD: 3D-structure    Complete proteome    Hypusine    Initiation factor    Protein biosynthesis    SCOP: b.34.5.2 All beta proteins    SH3-like barrel    Translation proteins SH3-like domain    eIF5a N-terminal domain-like    Eukaryotic initiation translation factor 5a (eIF5a)    Archaeon Pyrococcus horikoshii SCOP: b.40.4.5 All beta proteins    OB-fold    Nucleic acid-binding proteins    Cold shock DNA-binding domain-like    C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a)    Archaeon Pyrococcus horikoshii GO:  translation initiation factor activity    translational initiation    CHAIN: B SWISS-PROT/TREMBL: O50089    KEYWORD: 3D-structure    Complete proteome    Hypusine    Initiation factor    Protein biosynthesis    SCOP: b.34.5.2 All beta proteins    SH3-like barrel    Translation proteins SH3-like domain    eIF5a N-terminal domain-like    Eukaryotic initiation translation factor 5a (eIF5a)    Archaeon Pyrococcus horikoshii SCOP: b.40.4.5 All beta proteins    OB-fold    Nucleic acid-binding proteins    Cold shock DNA-binding domain-like    C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a)    Archaeon Pyrococcus horikoshii GO:  translation initiation factor activity    translational initiation    CHAIN: C SWISS-PROT/TREMBL: O50089    KEYWORD: 3D-structure    Complete proteome    Hypusine    Initiation factor    Protein biosynthesis    SCOP: b.34.5.2 All beta proteins    SH3-like barrel    Translation proteins SH3-like domain    eIF5a N-terminal domain-like    Eukaryotic initiation translation factor 5a (eIF5a)    Archaeon Pyrococcus horikoshii SCOP: b.40.4.5 All beta proteins    OB-fold    Nucleic acid-binding proteins    Cold shock DNA-binding domain-like    C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a)    Archaeon Pyrococcus horikoshii GO:  translation initiation factor activity    translational initiation

Image Source: PDB

Loops in ArchDB95 clusters

1iz6_A_55 - AR => SUBCLASS : 2.2.1
1iz6_A_4 - AR => SUBCLASS : 8.9.1
1iz6_A_118 - HA => SUBCLASS : 2.1.1
1iz6_A_118 - HA => SUBCLASS : 2.1.4
1iz6_A_72 - HA => SUBCLASS : 2.2.3
1iz6_A_72 - HA => SUBCLASS : 2.2.36
1iz6_A_85 - HA => SUBCLASS : 4.1.1
1iz6_A_42 - HA => SUBCLASS : 4.1.2

Loops not clustered in ArchDB

1iz6_A_65 - AR
1iz6_A_96 - EH
1iz6_A_17 - HA
1iz6_A_23 - HA
1iz6_A_101 - HE

1iz6 A - percentage of sequence identity: 100
1iz6 B - percentage of sequence identity: 100
1iz6 C - percentage of sequence identity: 100