PDB: 1jm6 Compound: pyruvate dehydrogenase kinase, isozyme 2 Classification: TRANSFERASE Entry date in PDB: 2001-10-24 Resolution [Å]: 2.50 R-Factor: 0.191

CHAIN: A SWISS-PROT/TREMBL: Q64536    KEYWORD: 3D-structure    Kinase    Mitochondrion    Multigene family    Transferase    Transit peptide    EC: 2.7.1.99 SCOP: a.29.5.1 All alpha proteins    Bromodomain-like    alpha-ketoacid dehydrogenase kinase, N-terminal domain    alpha-ketoacid dehydrogenase kinase, N-terminal domain    Pyruvate dehydrogenase kinase    Rat (Rattus norvegicus), isozyme 2 SCOP: d.122.1.4 Alpha and beta proteins (a+b)    ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase    ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase    alpha-ketoacid dehydrogenase kinase, C-terminal domain    Pyruvate dehydrogenase kinase    Rat (Rattus norvegicus), isozyme 2 GO:  ATP binding    kinase activity    transferase activity, transferring phosphorus-containing groups    phosphorylation    protein amino acid phosphorylation    CHAIN: B SWISS-PROT/TREMBL: Q64536    KEYWORD: 3D-structure    Kinase    Mitochondrion    Multigene family    Transferase    Transit peptide    EC: 2.7.1.99 SCOP: a.29.5.1 All alpha proteins    Bromodomain-like    alpha-ketoacid dehydrogenase kinase, N-terminal domain    alpha-ketoacid dehydrogenase kinase, N-terminal domain    Pyruvate dehydrogenase kinase    Rat (Rattus norvegicus), isozyme 2 SCOP: d.122.1.4 Alpha and beta proteins (a+b)    ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase    ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase    alpha-ketoacid dehydrogenase kinase, C-terminal domain    Pyruvate dehydrogenase kinase    Rat (Rattus norvegicus), isozyme 2 GO:  ATP binding    kinase activity    transferase activity, transferring phosphorus-containing groups    phosphorylation    protein amino acid phosphorylation

Image Source: PDB

Loops in ArchDB40 clusters

1jm6_A_1321 - HE => SUBCLASS : 1.1.1
1jm6_A_1189 - HE => SUBCLASS : 1.3.4
1jm6_A_1189 - HE => SUBCLASS : 5.9.1
1jm6_A_1265 - HA => SUBCLASS : 2.2.3
1jm6_A_1335 - HA => SUBCLASS : 3.9.2
1jm6_A_1229 - EH => SUBCLASS : 1.1.38
1jm6_A_1065 - HH => SUBCLASS : 1.1.11

Loops in ArchDB95 clusters

1jm6_A_1229 - EH => SUBCLASS : 1.1.60
1jm6_A_1065 - HH => SUBCLASS : 1.1.3
1jm6_A_1038 - HH => SUBCLASS : 2.1.3
1jm6_A_1321 - HE => SUBCLASS : 1.1.1
1jm6_A_1189 - HE => SUBCLASS : 4.24.1
1jm6_A_1265 - HA => SUBCLASS : 2.2.3
1jm6_A_1335 - HA => SUBCLASS : 3.13.2

Loops in ArchDB-EC clusters

1jm6_A_1038 - HH => SUBCLASS : 2.1.24

Loops in ArchDB-KI clusters

1jm6_A_1321 - HE => SUBCLASS : 1.1.2
1jm6_A_1321 - HE => SUBCLASS : 2.1.2
1jm6_A_1321 - HE => SUBCLASS : 2.3.1

Loops not clustered in ArchDB

1jm6_A_1214 - AR
1jm6_A_1214 - AR
1jm6_A_1184 - EH
1jm6_A_1275 - EH
1jm6_A_1265 - HA
1jm6_A_1335 - HA
1jm6_A_1234 - HE
1jm6_A_1143 - HE
1jm6_A_1025 - HH
1jm6_A_1098 - HH
1jm6_A_1118 - HH
1jm6_A_1008 - HH
1jm6_A_1071 - HH

Loops not clustered in ArchDB-KI

1jm6_A_1214 - AR
1jm6_A_1229 - EH
1jm6_A_1184 - EH
1jm6_A_1275 - EH
1jm6_A_1143 - HE
1jm6_A_1234 - HE
1jm6_A_1189 - HE
1jm6_A_1071 - HH
1jm6_A_1038 - HH
1jm6_A_1098 - HH
1jm6_A_1118 - HH
1jm6_A_1025 - HH
1jm6_A_1065 - HH
1jm6_A_1008 - HH

1jm6 A - percentage of sequence identity: 100
1jm6 B - percentage of sequence identity: 100
1y8n A - percentage of sequence identity: 66
1y8o A - percentage of sequence identity: 66
1y8p A - percentage of sequence identity: 66
2btz A - percentage of sequence identity: 97
2bu2 A - percentage of sequence identity: 97
2bu5 A - percentage of sequence identity: 97
2bu6 A - percentage of sequence identity: 97
2bu7 A - percentage of sequence identity: 97
2bu8 A - percentage of sequence identity: 97