PDB: 1k0r Compound: nusa Classification: TRANSCRIPTION Entry date in PDB: 2001-12-21 Resolution [Å]: 1.70 R-Factor: 0.248

CHAIN: A SWISS-PROT/TREMBL: O05818    KEYWORD: 3D-structure    Complete proteome    RNA-binding    Transcription antitermination    Transcription termination    SCOP: b.40.4.5 All beta proteins    OB-fold    Nucleic acid-binding proteins    Cold shock DNA-binding domain-like    S1 domain of NusA    Mycobacterium tuberculosis SCOP: d.52.3.1 Alpha and beta proteins (a+b)    Alpha-lytic protease prodomain-like    Prokaryotic type KH domain (KH-domain type II)    Prokaryotic type KH domain (KH-domain type II)    Transcription factor NusA, C-terminal domains    Mycobacterium tuberculosis SCOP: d.52.3.1 Alpha and beta proteins (a+b)    Alpha-lytic protease prodomain-like    Prokaryotic type KH domain (KH-domain type II)    Prokaryotic type KH domain (KH-domain type II)    Transcription factor NusA, C-terminal domains    Mycobacterium tuberculosis SCOP: d.202.1.1 Alpha and beta proteins (a+b)    Transcription factor NusA, N-terminal domain    Transcription factor NusA, N-terminal domain    Transcription factor NusA, N-terminal domain    Transcription factor NusA, N-terminal domain    Mycobacterium tuberculosis GO:  nucleic acid binding    RNA binding    transcription regulator activity    CHAIN: B SWISS-PROT/TREMBL: O05818    KEYWORD: 3D-structure    Complete proteome    RNA-binding    Transcription antitermination    Transcription termination    SCOP: b.40.4.5 All beta proteins    OB-fold    Nucleic acid-binding proteins    Cold shock DNA-binding domain-like    S1 domain of NusA    Mycobacterium tuberculosis SCOP: d.52.3.1 Alpha and beta proteins (a+b)    Alpha-lytic protease prodomain-like    Prokaryotic type KH domain (KH-domain type II)    Prokaryotic type KH domain (KH-domain type II)    Transcription factor NusA, C-terminal domains    Mycobacterium tuberculosis SCOP: d.52.3.1 Alpha and beta proteins (a+b)    Alpha-lytic protease prodomain-like    Prokaryotic type KH domain (KH-domain type II)    Prokaryotic type KH domain (KH-domain type II)    Transcription factor NusA, C-terminal domains    Mycobacterium tuberculosis SCOP: d.202.1.1 Alpha and beta proteins (a+b)    Transcription factor NusA, N-terminal domain    Transcription factor NusA, N-terminal domain    Transcription factor NusA, N-terminal domain    Transcription factor NusA, N-terminal domain    Mycobacterium tuberculosis GO:  nucleic acid binding    RNA binding    transcription regulator activity

Image Source: PDB

Loops in ArchDB40 clusters

1k0r_A_131 - HA => SUBCLASS : 2.2.1
1k0r_A_205 - HA => SUBCLASS : 3.9.1
1k0r_A_279 - HA => SUBCLASS : 4.1.1
1k0r_A_279 - HA => SUBCLASS : 4.1.2
1k0r_A_289 - EH => SUBCLASS : 1.1.17
1k0r_A_289 - EH => SUBCLASS : 1.1.29
1k0r_A_254 - EH => SUBCLASS : 2.1.5
1k0r_A_178 - EH => SUBCLASS : 3.1.6
1k0r_A_254 - EH => SUBCLASS : 4.18.1
1k0r_A_254 - EH => SUBCLASS : 4.25.1
1k0r_A_186 - HH => SUBCLASS : 1.2.12
1k0r_A_231 - HH => SUBCLASS : 4.40.1
1k0r_A_299 - HH => SUBCLASS : 4.40.1

Loops in ArchDB95 clusters

1k0r_A_289 - EH => SUBCLASS : 1.2.2
1k0r_A_114 - EH => SUBCLASS : 2.2.1
1k0r_A_178 - EH => SUBCLASS : 3.2.4
1k0r_A_178 - EH => SUBCLASS : 3.2.7
1k0r_A_254 - EH => SUBCLASS : 4.3.1
1k0r_A_186 - HH => SUBCLASS : 1.1.8
1k0r_A_186 - HH => SUBCLASS : 1.2.21
1k0r_A_186 - HH => SUBCLASS : 1.2.38
1k0r_A_231 - HH => SUBCLASS : 4.54.1
1k0r_A_299 - HH => SUBCLASS : 4.54.1
1k0r_A_131 - HA => SUBCLASS : 2.2.1
1k0r_A_279 - HA => SUBCLASS : 4.1.1

Loops not clustered in ArchDB

1k0r_A_142 - AR
1k0r_A_71 - EH
1k0r_A_217 - EH
1k0r_A_59 - HA
1k0r_A_162 - HA
1k0r_A_264 - HE
1k0r_A_241 - HE
1k0r_A_198 - HE
1k0r_A_123 - HE
1k0r_A_89 - HE
1k0r_A_308 - HE

1k0r A - percentage of sequence identity: 100
1k0r B - percentage of sequence identity: 100
2asb A - percentage of sequence identity: 100
2atw A - percentage of sequence identity: 100
2atw C - percentage of sequence identity: 100