PDB: 1kk1 Compound: eif2gamma Classification: TRANSLATION Entry date in PDB: 2002-04-10 Resolution [Å]: 1.80 R-Factor: 0.219

CHAIN: A SWISS-PROT/TREMBL: Q9V1G0    KEYWORD: 3D-structure    Complete proteome    GTP-binding    Initiation factor    Protein biosynthesis    SCOP: b.43.3.1 All beta proteins    Reductase/isomerase/elongation factor common domain    Translation proteins    Elongation factors    Initiation factor eIF2 gamma subunit, domain II    Archaeon Pyrococcus abyssi SCOP: b.44.1.1 All beta proteins    Elongation factor/aminomethyltransferase common domain    EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain    EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain    Initiation factor eIF2 gamma subunit    Archaeon Pyrococcus abyssi SCOP: c.37.1.8 Alpha and beta proteins (a/b)    P-loop containing nucleoside triphosphate hydrolases    P-loop containing nucleoside triphosphate hydrolases    G proteins    Initiation factor eIF2 gamma subunit, N-terminal (G) domain    Archaeon Pyrococcus abyssi GO:  GTP binding    protein biosynthesis

Image Source: PDB

Loops in ArchDB40 clusters

1kk1_A_389 - HA => SUBCLASS : 2.3.2
1kk1_A_51 - HA => SUBCLASS : 6.1.1
1kk1_A_9 - EH => SUBCLASS : 6.1.1
1kk1_A_140 - EH => SUBCLASS : 7.1.1
1kk1_A_280 - AR => SUBCLASS : 1.1.4
1kk1_A_373 - AR => SUBCLASS : 4.4.5

Loops in ArchDB95 clusters

1kk1_A_9 - EH => SUBCLASS : 6.1.1
1kk1_A_176 - EH => SUBCLASS : 6.5.1
1kk1_A_140 - EH => SUBCLASS : 7.1.1
1kk1_A_373 - AR => SUBCLASS : 1.1.2
1kk1_A_280 - AR => SUBCLASS : 1.2.7
1kk1_A_233 - AR => SUBCLASS : 1.3.1
1kk1_A_284 - AR => SUBCLASS : 4.54.1
1kk1_A_389 - HA => SUBCLASS : 2.3.6
1kk1_A_51 - HA => SUBCLASS : 4.1.1

Loops not clustered in ArchDB

1kk1_A_66 - AR
1kk1_A_243 - AR
1kk1_A_291 - AR
1kk1_A_311 - AR
1kk1_A_321 - AR
1kk1_A_109 - EH
1kk1_A_80 - EH
1kk1_A_360 - HA
1kk1_A_352 - HA
1kk1_A_262 - HA
1kk1_A_248 - HA
1kk1_A_210 - HA
1kk1_A_23 - HE
1kk1_A_93 - HE
1kk1_A_123 - HE
1kk1_A_152 - HE
1kk1_A_187 - HE

1kjz A - percentage of sequence identity: 100
1kk0 A - percentage of sequence identity: 99
1kk2 A - percentage of sequence identity: 100
1kk3 A - percentage of sequence identity: 99