PDB: 1knw Compound: diaminopimelate decarboxylase Classification: LYASE Entry date in PDB: 2003-11-11 Resolution [Å]: 2.10 R-Factor: 0.173

CHAIN: A SWISS-PROT/TREMBL: P00861    KEYWORD: Complete proteome    Decarboxylase    Lyase    Lysine biosynthesis    Pyridoxal phosphate    EC: 4.1.1.20 SCOP: b.49.2.3 All beta proteins    Domain of alpha and beta subunits of F1 ATP synthase-like    Alanine racemase C-terminal domain-like    Eukaryotic ODC-like    Diaminopimelate decarboxylase LysA    Escherichia coli SCOP: b.49.2.3 All beta proteins    Domain of alpha and beta subunits of F1 ATP synthase-like    Alanine racemase C-terminal domain-like    Eukaryotic ODC-like    Diaminopimelate decarboxylase LysA    Escherichia coli SCOP: c.1.6.1 Alpha and beta proteins (a/b)    TIM beta/alpha-barrel    PLP-binding barrel    Alanine racemase-like, N-terminal domain    Diaminopimelate decarboxylase LysA    Escherichia coli GO:  catalytic activity    diaminopimelate decarboxylase activity    lysine biosynthesis via diaminopimelate

Image Source: PDB

Loops in ArchDB40 clusters

1knw_A_394 - HA => SUBCLASS : 2.1.1
1knw_A_278 - HA => SUBCLASS : 2.3.2
1knw_A_166 - EH => SUBCLASS : 1.3.1
1knw_A_119 - EH => SUBCLASS : 2.1.1
1knw_A_71 - EH => SUBCLASS : 2.1.1
1knw_A_97 - EH => SUBCLASS : 4.11.1
1knw_A_48 - EH => SUBCLASS : 6.6.3
1knw_A_359 - AR => SUBCLASS : 6.24.1

Loops in ArchDB95 clusters

1knw_A_166 - EH => SUBCLASS : 1.2.1
1knw_A_119 - EH => SUBCLASS : 2.1.2
1knw_A_71 - EH => SUBCLASS : 2.1.2
1knw_A_97 - EH => SUBCLASS : 4.8.1
1knw_A_48 - EH => SUBCLASS : 6.44.1
1knw_A_359 - AR => SUBCLASS : 6.40.1
1knw_A_394 - HA => SUBCLASS : 2.1.1

Loops in ArchDB-EC clusters

1knw_A_198 - HE => SUBCLASS : 5.20.1

Loops not clustered in ArchDB

1knw_A_369 - AR
1knw_A_317 - AR
1knw_A_317 - AR
1knw_A_359 - AR
1knw_A_369 - AR
1knw_A_401 - EH
1knw_A_293 - EH
1knw_A_264 - EH
1knw_A_221 - EH
1knw_A_184 - EH
1knw_A_28 - EH
1knw_A_332 - HA
1knw_A_138 - HA
1knw_A_278 - HA
1knw_A_332 - HA
1knw_A_138 - HA
1knw_A_394 - HA
1knw_A_307 - HE
1knw_A_14 - HE
1knw_A_33 - HE
1knw_A_59 - HE
1knw_A_77 - HE
1knw_A_106 - HE
1knw_A_124 - HE
1knw_A_171 - HE
1knw_A_271 - HE
1knw_A_241 - HE

1ko0 A - percentage of sequence identity: 100