PDB: 1mv8 Compound: gdp-mannose 6-dehydrogenase Classification: OXIDOREDUCTASE Entry date in PDB: 2003-05-06 Resolution [Å]: 1.55 R-Factor: 0.175

CHAIN: A SWISS-PROT/TREMBL: P11759    KEYWORD: 3D-structure    Alginate biosynthesis    Complete proteome    NAD    Oxidoreductase    EC: 1.1.1.132 SCOP: a.100.1.4 All alpha proteins    6-phosphogluconate dehydrogenase C-terminal domain-like    6-phosphogluconate dehydrogenase C-terminal domain-like    UDP-glucose/GDP-mannose dehydrogenase dimerisation domain    GDP-mannose 6-dehydrogenase, middle domain    Pseudomonas aeruginosa SCOP: c.2.1.6 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    6-phosphogluconate dehydrogenase-like, N-terminal domain    GDP-mannose 6-dehydrogenase    Pseudomonas aeruginosa SCOP: c.26.3.1 Alpha and beta proteins (a/b)    Adenine nucleotide alpha hydrolase-like    UDP-glucose/GDP-mannose dehydrogenase C-terminal domain    UDP-glucose/GDP-mannose dehydrogenase C-terminal domain    GDP-mannose 6-dehydrogenase, GDP-binding domain    Pseudomonas aeruginosa GO:  electron transport    CHAIN: B SWISS-PROT/TREMBL: P11759    KEYWORD: 3D-structure    Alginate biosynthesis    Complete proteome    NAD    Oxidoreductase    EC: 1.1.1.132 SCOP: a.100.1.4 All alpha proteins    6-phosphogluconate dehydrogenase C-terminal domain-like    6-phosphogluconate dehydrogenase C-terminal domain-like    UDP-glucose/GDP-mannose dehydrogenase dimerisation domain    GDP-mannose 6-dehydrogenase, middle domain    Pseudomonas aeruginosa SCOP: c.2.1.6 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    6-phosphogluconate dehydrogenase-like, N-terminal domain    GDP-mannose 6-dehydrogenase    Pseudomonas aeruginosa SCOP: c.26.3.1 Alpha and beta proteins (a/b)    Adenine nucleotide alpha hydrolase-like    UDP-glucose/GDP-mannose dehydrogenase C-terminal domain    UDP-glucose/GDP-mannose dehydrogenase C-terminal domain    GDP-mannose 6-dehydrogenase, GDP-binding domain    Pseudomonas aeruginosa GO:  electron transport    CHAIN: C SWISS-PROT/TREMBL: P11759    KEYWORD: 3D-structure    Alginate biosynthesis    Complete proteome    NAD    Oxidoreductase    EC: 1.1.1.132 SCOP: a.100.1.4 All alpha proteins    6-phosphogluconate dehydrogenase C-terminal domain-like    6-phosphogluconate dehydrogenase C-terminal domain-like    UDP-glucose/GDP-mannose dehydrogenase dimerisation domain    GDP-mannose 6-dehydrogenase, middle domain    Pseudomonas aeruginosa SCOP: c.2.1.6 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    6-phosphogluconate dehydrogenase-like, N-terminal domain    GDP-mannose 6-dehydrogenase    Pseudomonas aeruginosa SCOP: c.26.3.1 Alpha and beta proteins (a/b)    Adenine nucleotide alpha hydrolase-like    UDP-glucose/GDP-mannose dehydrogenase C-terminal domain    UDP-glucose/GDP-mannose dehydrogenase C-terminal domain    GDP-mannose 6-dehydrogenase, GDP-binding domain    Pseudomonas aeruginosa GO:  electron transport    CHAIN: D SWISS-PROT/TREMBL: P11759    KEYWORD: 3D-structure    Alginate biosynthesis    Complete proteome    NAD    Oxidoreductase    EC: 1.1.1.132 SCOP: a.100.1.4 All alpha proteins    6-phosphogluconate dehydrogenase C-terminal domain-like    6-phosphogluconate dehydrogenase C-terminal domain-like    UDP-glucose/GDP-mannose dehydrogenase dimerisation domain    GDP-mannose 6-dehydrogenase, middle domain    Pseudomonas aeruginosa SCOP: c.2.1.6 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    6-phosphogluconate dehydrogenase-like, N-terminal domain    GDP-mannose 6-dehydrogenase    Pseudomonas aeruginosa SCOP: c.26.3.1 Alpha and beta proteins (a/b)    Adenine nucleotide alpha hydrolase-like    UDP-glucose/GDP-mannose dehydrogenase C-terminal domain    UDP-glucose/GDP-mannose dehydrogenase C-terminal domain    GDP-mannose 6-dehydrogenase, GDP-binding domain    Pseudomonas aeruginosa GO:  electron transport

Image Source: PDB

Loops in ArchDB40 clusters

1mv8_A_334 - HE => SUBCLASS : 1.1.1
1mv8_A_12 - HE => SUBCLASS : 1.1.1
1mv8_A_70 - HE => SUBCLASS : 2.3.1
1mv8_A_384 - HE => SUBCLASS : 2.3.1
1mv8_A_51 - HE => SUBCLASS : 2.4.1
1mv8_A_97 - HE => SUBCLASS : 4.14.2
1mv8_A_97 - HE => SUBCLASS : 4.16.1
1mv8_A_404 - HE => SUBCLASS : 5.13.1
1mv8_A_348 - EH => SUBCLASS : 1.1.1
1mv8_A_348 - EH => SUBCLASS : 1.1.13
1mv8_A_174 - EH => SUBCLASS : 2.1.1
1mv8_A_64 - EH => SUBCLASS : 2.1.1
1mv8_A_25 - EH => SUBCLASS : 2.1.2
1mv8_A_2 - EH => SUBCLASS : 3.2.1

Loops in ArchDB95 clusters

1mv8_A_348 - EH => SUBCLASS : 1.1.11
1mv8_A_174 - EH => SUBCLASS : 2.1.2
1mv8_A_64 - EH => SUBCLASS : 2.1.2
1mv8_A_25 - EH => SUBCLASS : 2.1.3
1mv8_A_2 - EH => SUBCLASS : 3.5.1
1mv8_A_334 - HE => SUBCLASS : 1.1.1
1mv8_A_12 - HE => SUBCLASS : 1.1.1
1mv8_A_384 - HE => SUBCLASS : 2.2.1
1mv8_A_70 - HE => SUBCLASS : 2.2.1
1mv8_A_51 - HE => SUBCLASS : 2.4.1
1mv8_A_404 - HE => SUBCLASS : 5.17.1
1mv8_A_97 - HE => SUBCLASS : 6.12.1

Loops in ArchDB-EC clusters

1mv8_A_404 - HE => SUBCLASS : 5.11.1

Loops not clustered in ArchDB

1mv8_A_79 - EH
1mv8_A_118 - EH
1mv8_A_151 - EH
1mv8_A_198 - EH
1mv8_A_315 - EH
1mv8_A_393 - EH
1mv8_A_415 - HA
1mv8_A_415 - HA
1mv8_A_181 - HE
1mv8_A_293 - HE
1mv8_A_164 - HE
1mv8_A_134 - HE
1mv8_A_374 - HH
1mv8_A_366 - HH
1mv8_A_354 - HH
1mv8_A_269 - HH
1mv8_A_238 - HH
1mv8_A_203 - HH
1mv8_A_129 - HH
1mv8_A_33 - HH

1mfz A - percentage of sequence identity: 100
1mfz B - percentage of sequence identity: 100
1mfz C - percentage of sequence identity: 100
1mfz D - percentage of sequence identity: 100
1muu A - percentage of sequence identity: 100
1muu B - percentage of sequence identity: 100
1muu C - percentage of sequence identity: 100
1muu D - percentage of sequence identity: 100
1mv8 A - percentage of sequence identity: 100
1mv8 B - percentage of sequence identity: 100
1mv8 C - percentage of sequence identity: 100
1mv8 D - percentage of sequence identity: 100