PDB: 1njf Compound: DNA polymerase iii subunit gamma Classification: TRANSFERASE Entry date in PDB: 2003-04-08 Resolution [Å]: 2.30 R-Factor: 0.210

CHAIN: A SWISS-PROT/TREMBL: P06710    KEYWORD: 3D-structure    ATP-binding    Complete proteome    DNA replication    DNA-directed DNA polymerase    Ribosomal frameshift    Transferase    EC: 2.7.7.7 SCOP: c.37.1.20 Alpha and beta proteins (a/b)    P-loop containing nucleoside triphosphate hydrolases    P-loop containing nucleoside triphosphate hydrolases    Extended AAA-ATPase domain    delta prime subunit of DNA polymerase III, N-domain    Escherichia coli GO:  protein complex    ATP binding    DNA binding    nucleoside-triphosphatase activity    nucleotide binding    DNA replication    CHAIN: B SWISS-PROT/TREMBL: P06710    KEYWORD: 3D-structure    ATP-binding    Complete proteome    DNA replication    DNA-directed DNA polymerase    Ribosomal frameshift    Transferase    EC: 2.7.7.7 SCOP: c.37.1.20 Alpha and beta proteins (a/b)    P-loop containing nucleoside triphosphate hydrolases    P-loop containing nucleoside triphosphate hydrolases    Extended AAA-ATPase domain    delta prime subunit of DNA polymerase III, N-domain    Escherichia coli GO:  protein complex    ATP binding    DNA binding    nucleoside-triphosphatase activity    nucleotide binding    DNA replication    CHAIN: C SWISS-PROT/TREMBL: P06710    KEYWORD: 3D-structure    ATP-binding    Complete proteome    DNA replication    DNA-directed DNA polymerase    Ribosomal frameshift    Transferase    EC: 2.7.7.7 SCOP: c.37.1.20 Alpha and beta proteins (a/b)    P-loop containing nucleoside triphosphate hydrolases    P-loop containing nucleoside triphosphate hydrolases    Extended AAA-ATPase domain    delta prime subunit of DNA polymerase III, N-domain    Escherichia coli GO:  protein complex    ATP binding    DNA binding    nucleoside-triphosphatase activity    nucleotide binding    DNA replication    CHAIN: D SWISS-PROT/TREMBL: P06710    KEYWORD: 3D-structure    ATP-binding    Complete proteome    DNA replication    DNA-directed DNA polymerase    Ribosomal frameshift    Transferase    EC: 2.7.7.7 SCOP: c.37.1.20 Alpha and beta proteins (a/b)    P-loop containing nucleoside triphosphate hydrolases    P-loop containing nucleoside triphosphate hydrolases    Extended AAA-ATPase domain    delta prime subunit of DNA polymerase III, N-domain    Escherichia coli GO:  protein complex    ATP binding    DNA binding    nucleoside-triphosphatase activity    nucleotide binding    DNA replication

Image Source: PDB

Loops in ArchDB40 clusters

1njf_A_164 - HE => SUBCLASS : 0.1.10
1njf_A_133 - HE => SUBCLASS : 5.13.1
1njf_A_171 - EH => SUBCLASS : 3.3.7
1njf_A_171 - EH => SUBCLASS : 5.16.1
1njf_A_40 - EH => SUBCLASS : 6.1.1
1njf_A_121 - EH => SUBCLASS : 6.29.1
1njf_A_150 - EH => SUBCLASS : 7.4.2
1njf_A_200 - HH => SUBCLASS : 3.8.1
1njf_A_180 - HH => SUBCLASS : 5.1.1

Loops in ArchDB95 clusters

1njf_A_171 - EH => SUBCLASS : 3.1.5
1njf_A_40 - EH => SUBCLASS : 6.1.1
1njf_A_121 - EH => SUBCLASS : 6.46.1
1njf_A_150 - EH => SUBCLASS : 7.3.3
1njf_A_200 - HH => SUBCLASS : 3.7.4
1njf_A_200 - HH => SUBCLASS : 3.30.1
1njf_A_180 - HH => SUBCLASS : 5.1.1
1njf_A_164 - HE => SUBCLASS : 0.1.14
1njf_A_133 - HE => SUBCLASS : 5.17.1
1njf_A_22 - HE => SUBCLASS : 5.58.1

Loops not clustered in ArchDB

1njf_A_90 - EH
1njf_A_77 - HE
1njf_A_101 - HE
1njf_A_6 - HH
1njf_A_51 - HH
1njf_A_214 - HH

1jr3 A - percentage of sequence identity: 100
1jr3 B - percentage of sequence identity: 100
1jr3 C - percentage of sequence identity: 100
1njf A - percentage of sequence identity: 100
1njf B - percentage of sequence identity: 100
1njf C - percentage of sequence identity: 100
1njf D - percentage of sequence identity: 100
1njg A - percentage of sequence identity: 100
1njg B - percentage of sequence identity: 100
1xxh B - percentage of sequence identity: 100
1xxh C - percentage of sequence identity: 100
1xxh D - percentage of sequence identity: 100
1xxh G - percentage of sequence identity: 100
1xxh H - percentage of sequence identity: 100
1xxh I - percentage of sequence identity: 100
1xxi B - percentage of sequence identity: 100
1xxi C - percentage of sequence identity: 100
1xxi D - percentage of sequence identity: 100
1xxi G - percentage of sequence identity: 100
1xxi H - percentage of sequence identity: 100
1xxi I - percentage of sequence identity: 100