ArchDB - Biological DataBase of Protein Loops

Information on 1nmm

PDB: 1nmm
Compound: alpha-lactalbumin
Classification: TRANSFERASE ACTIVATOR/TRANSFERASE
Entry date in PDB: 2003-01-21
Resolution [Å]: 2.00
R-Factor: 0.189

CHAIN: A

SWISS-PROT/TREMBL: P29752
   KEYWORD: 3D-structure    Calcium-binding    Glycoprotein    Lactose biosynthesis    Signal
SCOP: d.2.1.2 Alpha and beta proteins (a+b)    Lysozyme-like    Lysozyme-like    C-type lysozyme    alpha-Lactalbumin    Mouse (Mus musculus)
GO:  extracellular region    calcium ion binding    lactose synthase activity    lactose biosynthesis

CHAIN: B

SWISS-PROT/TREMBL: P08037
   KEYWORD: 3D-structure    Alternative initiation    Glycoprotein    Glycosyltransferase    Golgi stack    Multigene family    Signal-anchor    Transferase    Transmembrane
EC: 2.4.1.22
SCOP: c.68.1.2 Alpha and beta proteins (a/b)    Nucleotide-diphospho-sugar transferases    Nucleotide-diphospho-sugar transferases    beta 1,4 galactosyltransferase (b4GalT1)    beta 1,4 galactosyltransferase (b4GalT1)    Cow (Bos taurus)
GO:  transferase activity, transferring glycosyl groups    carbohydrate metabolism

CHAIN: C

CHAIN: D

Image Source: PDB

Stored Loops of 1nmm

Loops in ArchDB95 clusters

1nmm_A_55 - EH => SUBCLASS : 28.2.1
1nmm_A_5 - HH => SUBCLASS : 7.6.1
1nmm_A_23 - HE => SUBCLASS : 6.8.1
1nmm_A_41 - HA => SUBCLASS : 2.1.1

Loops not clustered in ArchDB

1nmm_A_48 - HA
1nmm_A_86 - HH

Homologous structures to 1nmm classified in ArchDB

1a4v - - percentage of sequence identity: 68
1alc - - percentage of sequence identity: 65
1b9o A - percentage of sequence identity: 67
1f6r A - percentage of sequence identity: 63
1f6r B - percentage of sequence identity: 63
1f6r C - percentage of sequence identity: 63
1f6r D - percentage of sequence identity: 63
1f6r E - percentage of sequence identity: 63
1f6r F - percentage of sequence identity: 63
1f6s A - percentage of sequence identity: 63
1f6s B - percentage of sequence identity: 63
1f6s C - percentage of sequence identity: 63
1f6s D - percentage of sequence identity: 63
1f6s E - percentage of sequence identity: 63
1f6s F - percentage of sequence identity: 63
1fkq A - percentage of sequence identity: 64
1fkv A - percentage of sequence identity: 63
1hfx - - percentage of sequence identity: 63
1hfy A - percentage of sequence identity: 63
1hfy B - percentage of sequence identity: 63
1hfz A - percentage of sequence identity: 63
1hfz B - percentage of sequence identity: 63
1hfz C - percentage of sequence identity: 63
1hfz D - percentage of sequence identity: 63
1hmk A - percentage of sequence identity: 63
1hml - - percentage of sequence identity: 68
1nf5 A - percentage of sequence identity: 100
1nf5 C - percentage of sequence identity: 100
1nhe A - percentage of sequence identity: 100
1nhe C - percentage of sequence identity: 100
1nkh A - percentage of sequence identity: 100
1nkh C - percentage of sequence identity: 100
1nmm A - percentage of sequence identity: 100
1nmm C - percentage of sequence identity: 100
1nqi A - percentage of sequence identity: 100
1nqi C - percentage of sequence identity: 100
1nwg A - percentage of sequence identity: 100
1nwg C - percentage of sequence identity: 100
1o23 A - percentage of sequence identity: 100
1o23 C - percentage of sequence identity: 100
1oqm A - percentage of sequence identity: 100
1oqm C - percentage of sequence identity: 100
1pzt A - percentage of sequence identity: 99
1pzy A - percentage of sequence identity: 100
1pzy C - percentage of sequence identity: 100
1yro A - percentage of sequence identity: 100
1yro C - percentage of sequence identity: 100