PDB: 1nyt Compound: shikimate 5-dehydrogenase Classification: OXIDOREDUCTASE Entry date in PDB: 2003-03-04 Resolution [Å]: 1.50 R-Factor: 0.136

CHAIN: A SWISS-PROT/TREMBL: P15770    KEYWORD: 3D-structure    Aromatic amino acid biosynthesis    Complete proteome    NADP    Oxidoreductase    EC: 1.1.1.25 SCOP: c.2.1.7 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    Aminoacid dehydrogenase-like, C-terminal domain    Shikimate 5-dehydrogenase AroE    Escherichia coli SCOP: c.58.1.5 Alpha and beta proteins (a/b)    Aminoacid dehydrogenase-like, N-terminal domain    Aminoacid dehydrogenase-like, N-terminal domain    Shikimate dehydrogenase-like    Shikimate 5-dehydrogenase AroE    Escherichia coli GO:  cytoplasm    NADP binding    shikimate 5-dehydrogenase activity    aromatic amino acid family biosynthesis, shikimate pathway    CHAIN: B SWISS-PROT/TREMBL: P15770    KEYWORD: 3D-structure    Aromatic amino acid biosynthesis    Complete proteome    NADP    Oxidoreductase    EC: 1.1.1.25 SCOP: c.2.1.7 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    Aminoacid dehydrogenase-like, C-terminal domain    Shikimate 5-dehydrogenase AroE    Escherichia coli SCOP: c.58.1.5 Alpha and beta proteins (a/b)    Aminoacid dehydrogenase-like, N-terminal domain    Aminoacid dehydrogenase-like, N-terminal domain    Shikimate dehydrogenase-like    Shikimate 5-dehydrogenase AroE    Escherichia coli GO:  cytoplasm    NADP binding    shikimate 5-dehydrogenase activity    aromatic amino acid family biosynthesis, shikimate pathway    CHAIN: C SWISS-PROT/TREMBL: P15770    KEYWORD: 3D-structure    Aromatic amino acid biosynthesis    Complete proteome    NADP    Oxidoreductase    EC: 1.1.1.25 SCOP: c.2.1.7 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    Aminoacid dehydrogenase-like, C-terminal domain    Shikimate 5-dehydrogenase AroE    Escherichia coli SCOP: c.58.1.5 Alpha and beta proteins (a/b)    Aminoacid dehydrogenase-like, N-terminal domain    Aminoacid dehydrogenase-like, N-terminal domain    Shikimate dehydrogenase-like    Shikimate 5-dehydrogenase AroE    Escherichia coli GO:  cytoplasm    NADP binding    shikimate 5-dehydrogenase activity    aromatic amino acid family biosynthesis, shikimate pathway    CHAIN: D SWISS-PROT/TREMBL: P15770    KEYWORD: 3D-structure    Aromatic amino acid biosynthesis    Complete proteome    NADP    Oxidoreductase    EC: 1.1.1.25 SCOP: c.2.1.7 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    Aminoacid dehydrogenase-like, C-terminal domain    Shikimate 5-dehydrogenase AroE    Escherichia coli SCOP: c.58.1.5 Alpha and beta proteins (a/b)    Aminoacid dehydrogenase-like, N-terminal domain    Aminoacid dehydrogenase-like, N-terminal domain    Shikimate dehydrogenase-like    Shikimate 5-dehydrogenase AroE    Escherichia coli GO:  cytoplasm    NADP binding    shikimate 5-dehydrogenase activity    aromatic amino acid family biosynthesis, shikimate pathway

Image Source: PDB

Loops in ArchDB40 clusters

1nyt_A_87 - HA => SUBCLASS : 3.1.1
1nyt_A_233 - EH => SUBCLASS : 0.1.21
1nyt_A_96 - EH => SUBCLASS : 0.1.47
1nyt_A_96 - EH => SUBCLASS : 0.1.73
1nyt_A_74 - EH => SUBCLASS : 1.1.1
1nyt_A_33 - EH => SUBCLASS : 1.1.10
1nyt_A_144 - EH => SUBCLASS : 2.1.1
1nyt_A_121 - EH => SUBCLASS : 3.2.1

Loops in ArchDB95 clusters

1nyt_A_233 - EH => SUBCLASS : 0.1.31
1nyt_A_96 - EH => SUBCLASS : 0.1.37
1nyt_A_96 - EH => SUBCLASS : 0.1.58
1nyt_A_74 - EH => SUBCLASS : 1.1.1
1nyt_A_74 - EH => SUBCLASS : 1.1.2
1nyt_A_33 - EH => SUBCLASS : 1.1.10
1nyt_A_144 - EH => SUBCLASS : 2.1.1
1nyt_A_121 - EH => SUBCLASS : 3.5.1
1nyt_A_238 - HH => SUBCLASS : 5.1.1
1nyt_A_238 - HH => SUBCLASS : 5.7.4
1nyt_A_129 - HE => SUBCLASS : 1.1.1
1nyt_A_65 - HE => SUBCLASS : 2.2.1
1nyt_A_65 - HE => SUBCLASS : 2.2.5
1nyt_A_43 - HE => SUBCLASS : 3.1.1
1nyt_A_221 - HE => SUBCLASS : 3.1.3
1nyt_A_77 - HE => SUBCLASS : 4.21.2
1nyt_A_16 - HE => SUBCLASS : 5.10.1
1nyt_A_87 - HA => SUBCLASS : 3.1.1

Loops in ArchDB-EC clusters

1nyt_A_238 - HH => SUBCLASS : 5.1.3

Loops not clustered in ArchDB

1nyt_A_168 - AR
1nyt_A_168 - AR
1nyt_A_4 - EH
1nyt_A_209 - EH
1nyt_A_57 - EH
1nyt_A_183 - HA
1nyt_A_87 - HA
1nyt_A_183 - HA
1nyt_A_102 - HE
1nyt_A_152 - HE

1nyt A - percentage of sequence identity: 100
1nyt B - percentage of sequence identity: 100
1nyt C - percentage of sequence identity: 100
1nyt D - percentage of sequence identity: 100