PDB: 1pmm Compound: glutamate decarboxylase beta Classification: LYASE Entry date in PDB: 2004-02-17 Resolution [Å]: 2.00 R-Factor: 0.182

CHAIN: A SWISS-PROT/TREMBL: P28302    KEYWORD: Complete proteome    Decarboxylase    Lyase    Multigene family    Pyridoxal phosphate    EC: 4.1.1.15 SCOP: c.67.1.6 Alpha and beta proteins (a/b)    PLP-dependent transferases    PLP-dependent transferases    Pyridoxal-dependent decarboxylase    Glutamate decarboxylase beta, GadB    Escherichia coli GO:  carboxy-lyase activity    glutamate decarboxylase activity    pyridoxal phosphate binding    amino acid metabolism    glutamate metabolism    CHAIN: B SWISS-PROT/TREMBL: P28302    KEYWORD: Complete proteome    Decarboxylase    Lyase    Multigene family    Pyridoxal phosphate    EC: 4.1.1.15 SCOP: c.67.1.6 Alpha and beta proteins (a/b)    PLP-dependent transferases    PLP-dependent transferases    Pyridoxal-dependent decarboxylase    Glutamate decarboxylase beta, GadB    Escherichia coli GO:  carboxy-lyase activity    glutamate decarboxylase activity    pyridoxal phosphate binding    amino acid metabolism    glutamate metabolism    CHAIN: C SWISS-PROT/TREMBL: P28302    KEYWORD: Complete proteome    Decarboxylase    Lyase    Multigene family    Pyridoxal phosphate    EC: 4.1.1.15 SCOP: c.67.1.6 Alpha and beta proteins (a/b)    PLP-dependent transferases    PLP-dependent transferases    Pyridoxal-dependent decarboxylase    Glutamate decarboxylase beta, GadB    Escherichia coli GO:  carboxy-lyase activity    glutamate decarboxylase activity    pyridoxal phosphate binding    amino acid metabolism    glutamate metabolism    CHAIN: D SWISS-PROT/TREMBL: P28302    KEYWORD: Complete proteome    Decarboxylase    Lyase    Multigene family    Pyridoxal phosphate    EC: 4.1.1.15 SCOP: c.67.1.6 Alpha and beta proteins (a/b)    PLP-dependent transferases    PLP-dependent transferases    Pyridoxal-dependent decarboxylase    Glutamate decarboxylase beta, GadB    Escherichia coli GO:  carboxy-lyase activity    glutamate decarboxylase activity    pyridoxal phosphate binding    amino acid metabolism    glutamate metabolism    CHAIN: E SWISS-PROT/TREMBL: P28302    KEYWORD: Complete proteome    Decarboxylase    Lyase    Multigene family    Pyridoxal phosphate    EC: 4.1.1.15 SCOP: c.67.1.6 Alpha and beta proteins (a/b)    PLP-dependent transferases    PLP-dependent transferases    Pyridoxal-dependent decarboxylase    Glutamate decarboxylase beta, GadB    Escherichia coli GO:  carboxy-lyase activity    glutamate decarboxylase activity    pyridoxal phosphate binding    amino acid metabolism    glutamate metabolism    CHAIN: F SWISS-PROT/TREMBL: P28302    KEYWORD: Complete proteome    Decarboxylase    Lyase    Multigene family    Pyridoxal phosphate    EC: 4.1.1.15 SCOP: c.67.1.6 Alpha and beta proteins (a/b)    PLP-dependent transferases    PLP-dependent transferases    Pyridoxal-dependent decarboxylase    Glutamate decarboxylase beta, GadB    Escherichia coli GO:  carboxy-lyase activity    glutamate decarboxylase activity    pyridoxal phosphate binding    amino acid metabolism    glutamate metabolism

Image Source: PDB

Loops in ArchDB40 clusters

1pmm_A_164 - HE => SUBCLASS : 1.1.1
1pmm_A_220 - HE => SUBCLASS : 1.3.4
1pmm_A_392 - HE => SUBCLASS : 3.2.1
1pmm_A_191 - HE => SUBCLASS : 4.6.1
1pmm_A_220 - HE => SUBCLASS : 5.32.1
1pmm_A_301 - HA => SUBCLASS : 2.1.1
1pmm_A_120 - EH => SUBCLASS : 2.1.1
1pmm_A_419 - EH => SUBCLASS : 5.22.2
1pmm_A_419 - EH => SUBCLASS : 5.41.1

Loops in ArchDB95 clusters

1pmm_A_120 - EH => SUBCLASS : 2.1.1
1pmm_A_419 - EH => SUBCLASS : 6.20.1
1pmm_A_164 - HE => SUBCLASS : 1.1.1
1pmm_A_191 - HE => SUBCLASS : 4.13.1
1pmm_A_220 - HE => SUBCLASS : 4.24.1
1pmm_A_301 - HA => SUBCLASS : 2.1.1
1pmm_A_267 - HA => SUBCLASS : 10.9.1

Loops not clustered in ArchDB

1pmm_A_285 - AR
1pmm_A_377 - EH
1pmm_A_308 - EH
1pmm_A_240 - EH
1pmm_A_202 - EH
1pmm_A_176 - EH
1pmm_A_156 - EH
1pmm_A_408 - HA
1pmm_A_363 - HA
1pmm_A_322 - HE
1pmm_A_251 - HE
1pmm_A_126 - HE
1pmm_A_91 - HE
1pmm_A_4 - HH
1pmm_A_39 - HH
1pmm_A_70 - HH

1pmm A - percentage of sequence identity: 100
1pmm B - percentage of sequence identity: 100
1pmm C - percentage of sequence identity: 100
1pmm D - percentage of sequence identity: 100
1pmm E - percentage of sequence identity: 100
1pmm F - percentage of sequence identity: 100
1pmo A - percentage of sequence identity: 100
1pmo B - percentage of sequence identity: 100
1pmo C - percentage of sequence identity: 100
1pmo D - percentage of sequence identity: 100
1pmo E - percentage of sequence identity: 100
1pmo F - percentage of sequence identity: 100
1xey A - percentage of sequence identity: 98
1xey B - percentage of sequence identity: 98