ArchDB - Biological DataBase of Protein Loops

Information on 1qmv

PDB: 1qmv
Compound: human thioredoxin peroxidase-b
Classification: PEROXIDASE
Entry date in PDB: 2000-07-28
Resolution [Å]: 1.70
R-Factor: 0.192

CHAIN: A

SWISS-PROT/TREMBL: P32119
   KEYWORD: 3D-structure    Antioxidant    Oxidoreductase    Peroxidase    Redox-active center
EC: 1.11.1.-
SCOP: c.47.1.10 Alpha and beta proteins (a/b)    Thioredoxin fold    Thioredoxin-like    Glutathione peroxidase-like    Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)    Human (Homo sapiens)
GO:

CHAIN: B

CHAIN: C

CHAIN: D

CHAIN: E

CHAIN: F

CHAIN: G

CHAIN: H

CHAIN: I

CHAIN: J

Image Source: PDB

Stored Loops of 1qmv

Loops in ArchDB40 clusters

1qmv_A_62 - HE => SUBCLASS : 1.1.3
1qmv_A_16 - HA => SUBCLASS : 2.1.1
1qmv_A_127 - HA => SUBCLASS : 3.1.1
1qmv_A_118 - HA => SUBCLASS : 4.1.2
1qmv_A_70 - EH => SUBCLASS : 3.6.2
1qmv_A_138 - EH => SUBCLASS : 7.6.1
1qmv_A_24 - AR => SUBCLASS : 6.9.1

Loops in ArchDB95 clusters

1qmv_A_70 - EH => SUBCLASS : 3.4.1
1qmv_A_70 - EH => SUBCLASS : 3.4.8
1qmv_A_103 - EH => SUBCLASS : 4.22.1
1qmv_A_138 - EH => SUBCLASS : 7.14.1
1qmv_A_24 - AR => SUBCLASS : 6.9.1
1qmv_A_62 - HE => SUBCLASS : 1.1.2
1qmv_A_16 - HA => SUBCLASS : 2.1.1
1qmv_A_16 - HA => SUBCLASS : 2.1.3
1qmv_A_127 - HA => SUBCLASS : 3.1.1
1qmv_A_118 - HA => SUBCLASS : 4.1.2
1qmv_A_118 - HA => SUBCLASS : 4.1.4
1qmv_A_118 - HA => SUBCLASS : 4.1.5

Loops in ArchDB-EC clusters

1qmv_A_110 - HE => SUBCLASS : 2.3.3

Loops not clustered in ArchDB

1qmv_A_124 - AR
1qmv_A_24 - AR
1qmv_A_124 - AR
1qmv_A_37 - EH
1qmv_A_118 - HA
1qmv_A_16 - HA
1qmv_A_127 - HA
1qmv_A_80 - HE
1qmv_A_152 - HH
1qmv_A_53 - HH

Homologous structures to 1qmv classified in ArchDB

1qmv A - percentage of sequence identity: 100
1qmv B - percentage of sequence identity: 100
1qmv C - percentage of sequence identity: 100
1qmv D - percentage of sequence identity: 100
1qmv E - percentage of sequence identity: 100
1qmv F - percentage of sequence identity: 100
1qmv G - percentage of sequence identity: 100
1qmv H - percentage of sequence identity: 100
1qmv I - percentage of sequence identity: 100
1qmv J - percentage of sequence identity: 100
1qq2 A - percentage of sequence identity: 77
1qq2 B - percentage of sequence identity: 77
1uul A - percentage of sequence identity: 63
1uul B - percentage of sequence identity: 63
1uul C - percentage of sequence identity: 63
1uul D - percentage of sequence identity: 63
1uul E - percentage of sequence identity: 63
1uul F - percentage of sequence identity: 63
1uul G - percentage of sequence identity: 63
1uul H - percentage of sequence identity: 63
1uul I - percentage of sequence identity: 63
1uul J - percentage of sequence identity: 63
1zye A - percentage of sequence identity: 64
1zye B - percentage of sequence identity: 64
1zye C - percentage of sequence identity: 64
1zye D - percentage of sequence identity: 64
1zye E - percentage of sequence identity: 64
1zye F - percentage of sequence identity: 64
1zye G - percentage of sequence identity: 64
1zye H - percentage of sequence identity: 64
1zye I - percentage of sequence identity: 64
1zye J - percentage of sequence identity: 64
1zye K - percentage of sequence identity: 64
1zye L - percentage of sequence identity: 64