PDB: 1qtm Compound: 5'-d(GpApCpCpApCpGpGpCpGpCp(2dt))-3' Classification: TRANSFERASE/DNA Entry date in PDB: 1999-08-16 Resolution [Å]: 2.30 R-Factor: 0.227

CHAIN: A SWISS-PROT/TREMBL: P19821    KEYWORD: 3D-structure    DNA repair    DNA replication    DNA-binding    DNA-directed DNA polymerase    Transferase    EC: 2.7.7.7 SCOP: c.55.3.5 Alpha and beta proteins (a/b)    Ribonuclease H-like motif    Ribonuclease H-like    DnaQ-like 3'-5' exonuclease    Exonuclease domain of prokaryotic DNA polymerase    Thermus aquaticus SCOP: e.8.1.1 Multi-domain proteins (alpha and beta)    DNA/RNA polymerases    DNA/RNA polymerases    DNA polymerase I    DNA polymerase I (Klenow fragment)    Thermus aquaticus GO:  intracellular    5'-3' exonuclease activity    DNA binding    DNA-directed DNA polymerase activity    nuclease activity    DNA replication

Image Source: PDB

Loops in ArchDB40 clusters

1qtm_A_589 - HE => SUBCLASS : 0.1.47
1qtm_A_796 - HE => SUBCLASS : 6.16.1
1qtm_A_719 - HA => SUBCLASS : 3.1.1
1qtm_A_306 - HA => SUBCLASS : 8.8.1
1qtm_A_786 - EH => SUBCLASS : 1.3.1
1qtm_A_331 - EH => SUBCLASS : 3.7.1
1qtm_A_516 - HH => SUBCLASS : 1.2.37
1qtm_A_675 - HH => SUBCLASS : 3.1.1
1qtm_A_626 - HH => SUBCLASS : 3.2.3
1qtm_A_402 - HH => SUBCLASS : 3.15.1
1qtm_A_373 - HH => SUBCLASS : 6.16.1
1qtm_A_638 - HH => SUBCLASS : 8.3.1

Loops in ArchDB95 clusters

1qtm_A_786 - EH => SUBCLASS : 1.2.4
1qtm_A_331 - EH => SUBCLASS : 2.1.6
1qtm_A_331 - EH => SUBCLASS : 3.3.3
1qtm_A_675 - HH => SUBCLASS : 3.1.1
1qtm_A_626 - HH => SUBCLASS : 3.1.5
1qtm_A_402 - HH => SUBCLASS : 3.11.1
1qtm_A_626 - HH => SUBCLASS : 3.21.1
1qtm_A_373 - HH => SUBCLASS : 6.43.1
1qtm_A_638 - HH => SUBCLASS : 8.8.1
1qtm_A_589 - HE => SUBCLASS : 0.1.18
1qtm_A_701 - HE => SUBCLASS : 1.2.6
1qtm_A_719 - HA => SUBCLASS : 3.1.1
1qtm_A_306 - HA => SUBCLASS : 7.12.1
1qtm_A_306 - HA => SUBCLASS : 8.15.1

Loops not clustered in ArchDB

1qtm_A_295 - AR
1qtm_A_559 - AR
1qtm_A_598 - AR
1qtm_A_819 - EH
1qtm_A_727 - EH
1qtm_A_604 - EH
1qtm_A_575 - EH
1qtm_A_449 - EH
1qtm_A_778 - HA
1qtm_A_563 - HA
1qtm_A_321 - HA
1qtm_A_738 - HE
1qtm_A_528 - HE
1qtm_A_434 - HE
1qtm_A_656 - HH
1qtm_A_614 - HH
1qtm_A_487 - HH
1qtm_A_453 - HH
1qtm_A_424 - HH
1qtm_A_387 - HH
1qtm_A_353 - HH
1qtm_A_338 - HH
1qtm_A_686 - HH

1cmw A - percentage of sequence identity: 100
1jxe - - percentage of sequence identity: 100
1ktq - - percentage of sequence identity: 100
1qss A - percentage of sequence identity: 99
1qsy A - percentage of sequence identity: 99
1taq - - percentage of sequence identity: 99
1tau A - percentage of sequence identity: 100
2ktq A - percentage of sequence identity: 100
3ktq A - percentage of sequence identity: 100
4ktq A - percentage of sequence identity: 100
5ktq A - percentage of sequence identity: 100