PDB: 1tdt Compound: tetrahydrodipicolinate-n-succinlytransferase Classification: TRANSFERASE Entry date in PDB: 1997-06-05 Resolution [Å]: 2.20 R-Factor: 0.170

CHAIN: A SWISS-PROT/TREMBL: P56220    KEYWORD: 3D-structure    Acyltransferase    Diaminopimelate biosynthesis    Lysine biosynthesis    Repeat    Transferase    EC: 2.3.1.117 SCOP: b.81.1.2 All beta proteins    Single-stranded left-handed beta-helix    Trimeric LpxA-like enzymes    Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD    Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD    Mycobacterium bovis GO:  transferase activity, transferring glycosyl groups    lysine biosynthesis via diaminopimelate    CHAIN: B SWISS-PROT/TREMBL: P56220    KEYWORD: 3D-structure    Acyltransferase    Diaminopimelate biosynthesis    Lysine biosynthesis    Repeat    Transferase    EC: 2.3.1.117 SCOP: b.81.1.2 All beta proteins    Single-stranded left-handed beta-helix    Trimeric LpxA-like enzymes    Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD    Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD    Mycobacterium bovis GO:  transferase activity, transferring glycosyl groups    lysine biosynthesis via diaminopimelate    CHAIN: C SWISS-PROT/TREMBL: P56220    KEYWORD: 3D-structure    Acyltransferase    Diaminopimelate biosynthesis    Lysine biosynthesis    Repeat    Transferase    EC: 2.3.1.117 SCOP: b.81.1.2 All beta proteins    Single-stranded left-handed beta-helix    Trimeric LpxA-like enzymes    Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD    Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD    Mycobacterium bovis GO:  transferase activity, transferring glycosyl groups    lysine biosynthesis via diaminopimelate

Image Source: PDB

Loops in ArchDB40 clusters

1tdt_A_73 - HA => SUBCLASS : 2.2.1
1tdt_A_214 - HA => SUBCLASS : 4.1.1
1tdt_A_52 - EH => SUBCLASS : 1.1.22
1tdt_A_52 - EH => SUBCLASS : 1.1.25
1tdt_A_221 - AR => SUBCLASS : 1.2.9
1tdt_A_221 - AR => SUBCLASS : 2.7.2
1tdt_A_157 - AR => SUBCLASS : 3.1.1
1tdt_A_126 - AR => SUBCLASS : 3.1.1
1tdt_A_177 - AR => SUBCLASS : 3.1.1
1tdt_A_133 - AR => SUBCLASS : 3.1.1
1tdt_A_183 - AR => SUBCLASS : 3.1.1
1tdt_A_104 - AR => SUBCLASS : 3.1.1
1tdt_A_195 - AR => SUBCLASS : 3.1.1
1tdt_A_144 - AR => SUBCLASS : 3.1.1
1tdt_A_110 - AR => SUBCLASS : 3.1.1
1tdt_A_201 - AR => SUBCLASS : 3.1.1
1tdt_A_151 - AR => SUBCLASS : 3.1.1
1tdt_A_116 - AR => SUBCLASS : 3.1.1
1tdt_A_226 - AR => SUBCLASS : 3.5.1
1tdt_A_139 - AR => SUBCLASS : 3.5.1
1tdt_A_207 - AR => SUBCLASS : 3.7.1
1tdt_A_207 - AR => SUBCLASS : 3.7.6
1tdt_A_207 - AR => SUBCLASS : 5.4.1

Loops in ArchDB95 clusters

1tdt_A_52 - EH => SUBCLASS : 1.1.19
1tdt_A_52 - EH => SUBCLASS : 1.1.23
1tdt_A_151 - AR => SUBCLASS : 1.1.1
1tdt_A_116 - AR => SUBCLASS : 1.1.1
1tdt_A_157 - AR => SUBCLASS : 1.1.1
1tdt_A_126 - AR => SUBCLASS : 1.1.1
1tdt_A_177 - AR => SUBCLASS : 1.1.1
1tdt_A_133 - AR => SUBCLASS : 1.1.1
1tdt_A_183 - AR => SUBCLASS : 1.1.1
1tdt_A_139 - AR => SUBCLASS : 1.1.1
1tdt_A_104 - AR => SUBCLASS : 1.1.1
1tdt_A_195 - AR => SUBCLASS : 1.1.1
1tdt_A_144 - AR => SUBCLASS : 1.1.1
1tdt_A_110 - AR => SUBCLASS : 1.1.1
1tdt_A_226 - AR => SUBCLASS : 1.1.1
1tdt_A_201 - AR => SUBCLASS : 1.1.1
1tdt_A_221 - AR => SUBCLASS : 1.1.6
1tdt_A_207 - AR => SUBCLASS : 2.2.1
1tdt_A_226 - AR => SUBCLASS : 2.3.1
1tdt_A_207 - AR => SUBCLASS : 5.4.1
1tdt_A_73 - HA => SUBCLASS : 2.2.1
1tdt_A_73 - HA => SUBCLASS : 3.1.1
1tdt_A_214 - HA => SUBCLASS : 4.1.1
1tdt_A_231 - HA => SUBCLASS : 4.8.3

Loops not clustered in ArchDB

1tdt_A_122 - AR
1tdt_A_163 - AR
1tdt_A_189 - AR
1tdt_A_81 - EH
1tdt_A_46 - HA
1tdt_A_25 - HE
1tdt_A_57 - HE
1tdt_A_95 - HE
1tdt_A_2 - HH

1kgq A - percentage of sequence identity: 100
1kgt A - percentage of sequence identity: 100
1tdt A - percentage of sequence identity: 100
1tdt B - percentage of sequence identity: 100
1tdt C - percentage of sequence identity: 100
2tdt - - percentage of sequence identity: 100
3tdt - - percentage of sequence identity: 100