PDB: 1uad Compound: ras-related protein ral-a Classification: ENDOCYTOSIS/EXOCYTOSIS Entry date in PDB: 2003-07-15 Resolution [Å]: 2.10 R-Factor: 0.219

CHAIN: A SWISS-PROT/TREMBL: P11233    KEYWORD: 3D-structure    GTP-binding    Lipoprotein    Prenylation    SCOP: c.37.1.8 Alpha and beta proteins (a/b)    P-loop containing nucleoside triphosphate hydrolases    P-loop containing nucleoside triphosphate hydrolases    G proteins    Ras-related protein RalA    Human (Homo sapiens) GO:  GTP binding    small GTPase mediated signal transduction    CHAIN: B SWISS-PROT/TREMBL: P11233    KEYWORD: 3D-structure    GTP-binding    Lipoprotein    Prenylation    SCOP: c.37.1.8 Alpha and beta proteins (a/b)    P-loop containing nucleoside triphosphate hydrolases    P-loop containing nucleoside triphosphate hydrolases    G proteins    Ras-related protein RalA    Human (Homo sapiens) GO:  GTP binding    small GTPase mediated signal transduction    CHAIN: C SWISS-PROT/TREMBL: O54921    KEYWORD: 3D-structure    Coiled coil    Exocytosis    Protein transport    Transport    SCOP: b.1.18.18 All beta proteins    Immunoglobulin-like beta-sandwich    E set domains    Other IPT/TIG domains    Exocyst complex component Sec5, Ral-binding domain    Mouse (Mus musculus) GO:   CHAIN: D SWISS-PROT/TREMBL: O54921    KEYWORD: 3D-structure    Coiled coil    Exocytosis    Protein transport    Transport    SCOP: b.1.18.18 All beta proteins    Immunoglobulin-like beta-sandwich    E set domains    Other IPT/TIG domains    Exocyst complex component Sec5, Ral-binding domain    Mouse (Mus musculus) GO:

Image Source: PDB

Loops in ArchDB40 clusters

1uad_C_53 - HA => SUBCLASS : 2.2.1
1uad_C_74 - HA => SUBCLASS : 3.2.4
1uad_C_17 - AR => SUBCLASS : 3.1.2
1uad_C_85 - AR => SUBCLASS : 3.2.2
1uad_C_17 - AR => SUBCLASS : 4.4.7

Loops in ArchDB95 clusters

1uad_A_88 - EH => SUBCLASS : 3.2.1
1uad_A_14 - EH => SUBCLASS : 6.1.1
1uad_A_152 - EH => SUBCLASS : 6.5.1
1uad_A_122 - EH => SUBCLASS : 11.2.1
1uad_C_85 - AR => SUBCLASS : 1.2.24
1uad_C_85 - AR => SUBCLASS : 3.1.4
1uad_C_17 - AR => SUBCLASS : 3.3.2
1uad_C_17 - AR => SUBCLASS : 3.3.4
1uad_C_17 - AR => SUBCLASS : 4.1.1
1uad_A_139 - HE => SUBCLASS : 1.2.2
1uad_A_139 - HE => SUBCLASS : 1.2.3
1uad_A_139 - HE => SUBCLASS : 1.2.4
1uad_A_77 - HE => SUBCLASS : 2.2.1
1uad_C_53 - HA => SUBCLASS : 2.2.1
1uad_C_74 - HA => SUBCLASS : 3.3.5

Loops not clustered in ArchDB

1uad_C_9 - AR
1uad_C_82 - AR
1uad_C_59 - AR
1uad_C_46 - AR
1uad_C_23 - AR
1uad_A_60 - EH
1uad_C_38 - HA
1uad_A_48 - HA
1uad_A_27 - HE
1uad_A_98 - HE

1hk6 A - percentage of sequence identity: 98
1uad C - percentage of sequence identity: 100
1uad D - percentage of sequence identity: 100