PDB: 1v33 Compound: DNA primase small subunit Classification: TRANSFERASE Entry date in PDB: 2004-03-23 Resolution [Å]: 1.80 R-Factor: 0.219

CHAIN: A SWISS-PROT/TREMBL: O57934    KEYWORD: Complete proteome    DNA replication    DNA-directed RNA polymerase    Primosome    Transferase    Zinc-finger    EC: 2.7.7.- SCOP: d.264.1.1 Alpha and beta proteins (a+b)    Prim-pol domain    Prim-pol domain    DNA primase    DNA primase    Archaeon Pyrococcus horikoshii GO:  DNA primase activity    DNA replication, synthesis of RNA primer

Image Source: PDB

Loops in ArchDB40 clusters

1v33_A_26 - HE => SUBCLASS : 0.1.29
1v33_A_26 - HE => SUBCLASS : 1.2.6
1v33_A_115 - HE => SUBCLASS : 3.1.1
1v33_A_56 - HE => SUBCLASS : 3.1.7
1v33_A_115 - HE => SUBCLASS : 3.1.7
1v33_A_297 - HA => SUBCLASS : 4.1.1
1v33_A_76 - HA => SUBCLASS : 4.1.1
1v33_A_297 - HA => SUBCLASS : 4.1.2
1v33_A_76 - HA => SUBCLASS : 4.1.2
1v33_A_48 - EH => SUBCLASS : 2.1.9
1v33_A_149 - EH => SUBCLASS : 2.4.1
1v33_A_290 - AR => SUBCLASS : 4.4.6
1v33_A_202 - HH => SUBCLASS : 2.1.2
1v33_A_157 - HH => SUBCLASS : 2.1.4
1v33_A_260 - HH => SUBCLASS : 2.1.13
1v33_A_157 - HH => SUBCLASS : 2.1.15
1v33_A_219 - HH => SUBCLASS : 3.3.1

Loops in ArchDB95 clusters

1v33_A_48 - EH => SUBCLASS : 2.1.9
1v33_A_149 - EH => SUBCLASS : 2.3.1
1v33_A_149 - EH => SUBCLASS : 3.10.2
1v33_A_70 - AR => SUBCLASS : 1.2.3
1v33_A_290 - AR => SUBCLASS : 4.5.5
1v33_A_157 - HH => SUBCLASS : 2.1.1
1v33_A_202 - HH => SUBCLASS : 2.1.1
1v33_A_202 - HH => SUBCLASS : 2.1.3
1v33_A_260 - HH => SUBCLASS : 2.1.34
1v33_A_320 - HH => SUBCLASS : 2.1.59
1v33_A_312 - HH => SUBCLASS : 2.4.4
1v33_A_219 - HH => SUBCLASS : 3.2.1
1v33_A_26 - HE => SUBCLASS : 2.7.6
1v33_A_115 - HE => SUBCLASS : 3.1.1
1v33_A_56 - HE => SUBCLASS : 3.3.6
1v33_A_281 - HE => SUBCLASS : 4.11.6
1v33_A_297 - HA => SUBCLASS : 4.1.1
1v33_A_76 - HA => SUBCLASS : 4.1.1

Loops not clustered in ArchDB

1v33_A_85 - AR
1v33_A_303 - AR
1v33_A_307 - EH
1v33_A_92 - EH
1v33_A_37 - HA
1v33_A_141 - HA
1v33_A_8 - HH
1v33_A_164 - HH
1v33_A_182 - HH
1v33_A_229 - HH
1v33_A_239 - HH

1g71 B - percentage of sequence identity: 79
1v34 A - percentage of sequence identity: 100