ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 8.34.1

Subclass Accession number: 3511
Subclass: 8.34.1

Type: EH beta-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Conserved Annotation
EC : 4.1 (>50 %)  4.1.2 (>50 %)  4.1.2.4
GO : GO:0004139 (>50 %)  GO:0016829 (>75 %)  GO:0016830 (>50 %)  GO:0016832 (>50 %)
SCOP : 51569 (>75 %)  51570 (>75 %)

Number of loops: 3

Average sequence ID (%) : 50.6 +/- 4.9
Average RMSD (Å) : 0.200 +/- 0.000

Consensus geometry

d (Å): 11

delta (°): 0-45

theta (°): 135-180

rho (°): 45-90

Consensus Sequence:	VhGFPLGhpppp
(φψ)-conformation:	bblpwalappaa

Pattern:	[KR]	[LV]	[CV]	[CT]	[V]	[IV]	[G]	[F]	[P]	[L]	[G]	[ALY]	[NQ]	[EK]	[KT]	[ERS]	[TV]	[K]	[AV]	x	[E]	[A]	[AIV]	[EFL]	[A]	[CV]	[AER]
Conservation:	0.194	-0.364	-0.442	-0.245	0.443	0.174	1.560	1.560	2.118	0.443	1.560	-1.355	-0.148	-0.075	-0.614	-1.045	-0.529	1.002	-0.634	-1.479	1.002	0.443	-0.797	-1.603	0.443	-0.442	-1.169

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1mzh_A_155	1mzh	A	155	181	KVCCVIGFPLGLNKTSVKVKEAVEAVR	EEEEEESTTT--S-HHHHHHHHHHHHH	xbbbxblxwavaxxaaaaaaaaaaaaa
1o0y_A_84	1o0y	A	84	110	KVVTVVGFPLGANETRTKAHEAIFAVE	EEEEEESTTT--S-HHHHHHHHHHHHH	xbbbbblbwavaxxaaaaaaaaaaaaa
1ub3_A_56	1ub3	A	56	82	RLVTVVGFPLGYQEKEVKALEAALACA	EEEEEESTTT--S-HHHHHHHHHHHHH	xxbbbblxwavaxxaaaaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1ub3_A_56	1ub3	A	HPD1-HYDROXY-PENTANE-3,4-DIOL-5-PHOSPHATE	V - 58
1ub3_A_56	1ub3	A	HPD1-HYDROXY-PENTANE-3,4-DIOL-5-PHOSPHATE	T - 59
1ub3_A_56	1ub3	A	HPD1-HYDROXY-PENTANE-3,4-DIOL-5-PHOSPHATE	V - 60
1ub3_A_56	1ub3	A	HPD1-HYDROXY-PENTANE-3,4-DIOL-5-PHOSPHATE	F - 63

Clusters included in this Subclass