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Information on SUBCLASS 1.1.40
Subclass Accession number: 4387
Subclass: 1.1.40 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 4

Average sequence ID (%) : 12.5 +/- 17.8
Average RMSD (Å) : 0.725 +/- 0.150

Consensus geometry
d (Å): 9 delta (°): 0-45 theta (°): 90-135 rho (°): 0-45
Consensus Sequence: XXphX
(φψ)-conformation: aapaa
Pattern: [FTW][GKQT]x[ILV]xx[DEH]xx[GL][EKNT][FG]
Conservation:1.319-0.724-0.7241.467-1.225-1.2251.281-0.724-0.5360.6780.0280.386
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1byu_A_231byu   A2435TTFVKRHLTGEFHHHHTTBHHHHHaaaaaaxaaaaa
1nrl_A_3151nrl   A315326FQQLLLEPMLKFHHHHTTSHHHHHaaaaaaxaaaaa
1sct_B_141sct   B2435WGVLSVDMEGTGHHHHGGGHHHHHaaaaaabaaaaa
3sdh_A_123sdh   A2233WKVIGSDKKGNGHHHHTT-HHHHHaaaaaabaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1byu_A_231byu   A     MGMAGNESIUM ION K - 23
1byu_A_231byu   A     GDPGUANOSINE-5'-DIPHOSPHATE K - 23
1byu_A_231byu   A     MGMAGNESIUM ION T - 24
1byu_A_231byu   A     GDPGUANOSINE-5'-DIPHOSPHATE T - 24
1byu_A_231byu   A     GDPGUANOSINE-5'-DIPHOSPHATE T - 25
1byu_A_231byu   A     GDPGUANOSINE-5'-DIPHOSPHATE F - 26
1nrl_A_3151nrl   A     SRL[2-(3,5-DI-TERT-BUTYL-4-HYDROXY-PHENYL)-1-(DIETHOXY-PHOSPHORYL)-VINYL]-PHOSPHONIC ACID DIETHLYL ESTER M - 323
1nrl_A_3151nrl   A     SRL[2-(3,5-DI-TERT-BUTYL-4-HYDROXY-PHENYL)-1-(DIETHOXY-PHOSPHORYL)-VINYL]-PHOSPHONIC ACID DIETHLYL ESTER L - 324
1nrl_A_3151nrl   A     SRL[2-(3,5-DI-TERT-BUTYL-4-HYDROXY-PHENYL)-1-(DIETHOXY-PHOSPHORYL)-VINYL]-PHOSPHONIC ACID DIETHLYL ESTER H - 327
1sct_B_141sct   B     HEMPROTOPORPHYRIN IX CONTAINING FE L - 38
1sct_B_141sct   B     HEMPROTOPORPHYRIN IX CONTAINING FE M - 39
1sct_B_141sct   B     CMOCARBON MONOXIDE M - 39
1sct_B_141sct   B     HEMPROTOPORPHYRIN IX CONTAINING FE L - 42
1sct_B_141sct   B     CMOCARBON MONOXIDE L - 42
3sdh_A_123sdh   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 36
3sdh_A_123sdh   A     HEMPROTOPORPHYRIN IX CONTAINING FE M - 37
3sdh_A_123sdh   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 40

Clusters included in this Subclass
CLUSTER: HH.2.111