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Information on SUBCLASS 8.8.1
Subclass Accession number: 4196
Subclass: 8.8.1 PSSM
Type: AR beta-beta link
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 5

Average sequence ID (%) : 38.0 +/- 27.2
Average RMSD (Å) : 0.340 +/- 0.089

Consensus geometry
d (Å): 15 delta (°): 90-135 theta (°): 90-135 rho (°): 90-135
Consensus Sequence: LhpXXcGpNQpW
(φψ)-conformation: bbppalpaaabb
Pattern: [IV]x[LV][KWY][NQST][CDKW]x[DNS][GS][ADS][NR][Q][KRY][W]x
Conservation:0.314-0.7790.036-0.001-0.452-0.987-0.811-0.0560.243-0.4000.2760.864-0.3673.064-0.944
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1knm_A_1141knm   A114128IQLYTCSNGSNQRWTEEEE-----GGG-EEbbxbpxavxaaabbb
1qxm_A_1731qxm   A173187IVLWQWFDSSRQKWIEEEE-----GGG-EExbxbxxalxaaabbx
1qxm_A_351qxm   A3549VKLWNKLSGANQKWREEEEE----GGG-EEbbxbpxavxaaabbx
1qxm_A_801qxm   A8094VSVKTDTNGDNQYWYEEEE-----GGG-EEbbbbpxavxaaabbx
1v6w_A_4201v6w   A420434IQLYSCSNGSNQRWTEEEE-----GGG-EEbbbbpxavxaaabbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1knm_A_1141knm   A     LATLACTOSE Q - 115
1knm_A_1141knm   A     LATLACTOSE Y - 117
1knm_A_1141knm   A     LATLACTOSE T - 118
1knm_A_1141knm   A     LATLACTOSE S - 120
1knm_A_1141knm   A     GOLGLYCEROL N - 121
1knm_A_1141knm   A     LATLACTOSE N - 124
1knm_A_1141knm   A     LATLACTOSE Q - 125
1knm_A_1141knm   A     GOLGLYCEROL R - 126
1qxm_A_351qxm   A     EDO1,2-ETHANEDIOL W - 38
1qxm_A_351qxm   A     EDO1,2-ETHANEDIOL N - 39
1qxm_A_351qxm   A     EDO1,2-ETHANEDIOL L - 41
1qxm_A_351qxm   A     EDO1,2-ETHANEDIOL G - 43
1qxm_A_351qxm   A     EDO1,2-ETHANEDIOL N - 45
1qxm_A_351qxm   A     EDO1,2-ETHANEDIOL Q - 46
1qxm_A_351qxm   A     EDO1,2-ETHANEDIOL I - 51
1qxm_A_351qxm   A     EDO1,2-ETHANEDIOL Y - 52
1qxm_A_801qxm   A     EDO1,2-ETHANEDIOL D - 85
1qxm_A_801qxm   A     EDO1,2-ETHANEDIOL Y - 94
1qxm_A_801qxm   A     EDO1,2-ETHANEDIOL L - 95
1qxm_A_801qxm   A     EDO1,2-ETHANEDIOL L - 96
1qxm_A_801qxm   A     EDO1,2-ETHANEDIOL Q - 97
1v6w_A_4201v6w   A     XYSXYLOPYRANOSE Q - 421
1v6w_A_4201v6w   A     GCV4-O-METHYL-ALPHA-D-GLUCURONIC ACID Y - 423
1v6w_A_4201v6w   A     XYSXYLOPYRANOSE Y - 423
1v6w_A_4201v6w   A     XYSXYLOPYRANOSE S - 424
1v6w_A_4201v6w   A     XYSXYLOPYRANOSE C - 425
1v6w_A_4201v6w   A     XYSXYLOPYRANOSE S - 426
1v6w_A_4201v6w   A     XYSXYLOPYRANOSE N - 430
1v6w_A_4201v6w   A     XYSXYLOPYRANOSE Q - 431

Clusters included in this Subclass
CLUSTER: AR.10.35
CLUSTER: AR.8.57