Information on SUBCLASS 1.3.16 |
Subclass Accession number: 4477
Subclass: 1.3.16 Type: HH alpha-alpha DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 3 Average sequence ID (%) : 12.8 +/- 14.3 Average RMSD (Å) : 0.267 +/- 0.058 Consensus geometry
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Consensus Sequence: | XpGXX |
(φψ)-conformation: | aalaa |
Pattern: | x | [KL] | [HNP] | x | [KLV] | [NQ] | [G] | [AKM] | [FTW] | [DHT] | [ENS] | x | [KLM] |
Conservation: | -0.642 | -0.167 | 0.029 | -0.717 | -0.567 | 0.813 | 2.939 | -0.493 | 0.104 | -0.269 | 0.179 | -1.015 | -0.194 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1g8k_A_247 | 1g8k | A | 247 | 259 | WLPNLQGATTSKK | HHHHHHTTTHHHH | aaaaaavaaaaaa |
1h2b_A_55 | 1h2b | A | 57 | 69 | DLHLVQGMWHELL | HHHHHHTTTHHHH | aaaaaavaaaaaa |
1nhd_A_132 | 1nhd | A | 139 | 151 | MKNYKNGKFDNDM | HHHHHTTTTHHHH | aaaaaavaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1h2b_A_55 | 1h2b | A | NAJNICOTINAMIDE-ADENINE-DINUCLEOTIDE (ACIDIC FORM) | H - 55 |
1h2b_A_55 | 1h2b | A | ZNZINC ION | H - 55 |
1h2b_A_55 | 1h2b | A | OCAOCTANOIC ACID (CAPRYLIC ACID) | T - 56 |
1h2b_A_55 | 1h2b | A | NAJNICOTINAMIDE-ADENINE-DINUCLEOTIDE (ACIDIC FORM) | T - 56 |
1h2b_A_55 | 1h2b | A | ZNZINC ION | T - 56 |
1h2b_A_55 | 1h2b | A | NAJNICOTINAMIDE-ADENINE-DINUCLEOTIDE (ACIDIC FORM) | D - 57 |
1h2b_A_55 | 1h2b | A | ZNZINC ION | D - 57 |
1h2b_A_55 | 1h2b | A | NAJNICOTINAMIDE-ADENINE-DINUCLEOTIDE (ACIDIC FORM) | L - 58 |
1h2b_A_55 | 1h2b | A | NAJNICOTINAMIDE-ADENINE-DINUCLEOTIDE (ACIDIC FORM) | H - 59 |
1h2b_A_55 | 1h2b | A | OCAOCTANOIC ACID (CAPRYLIC ACID) | W - 65 |
1h2b_A_55 | 1h2b | A | OCAOCTANOIC ACID (CAPRYLIC ACID) | L - 69 |
1nhd_A_132 | 1nhd | A | NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE | P - 132 |
1nhd_A_132 | 1nhd | A | NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE | V - 134 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1h2b_A_55 | 1h2b | A | OC1SUBSTRATE BINDING SITE FOR CHAIN A | T - 56 |
Clusters included in this Subclass |
CLUSTER: HH.4.374 |