ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 4.26.1

Subclass Accession number: 7390
Subclass: 4.26.1

Type: EH beta-alpha
DB: ArchDB-EC

Image coordinates:

Consensus coordinates:

Number of loops: 6

Average sequence ID (%) : 39.5 +/- 25.6
Average RMSD (Å) : 0.283 +/- 0.117

Consensus geometry

d (Å): 11

delta (°): 90-135

theta (°): 90-135

rho (°): 180-225

Consensus Sequence:	XDhphTXT
(φψ)-conformation:	bbabppaa

Pattern:	[CLT]	[FLV]	[IV]	[TV]	x	[D]	[FIPV]	[nqr]	[FLMW]	[ST]	x	[T]	[AC]	[rs]
Conservation:	-0.567	-0.310	0.745	0.032	-1.093	2.146	-0.884	-0.858	-0.083	0.644	-0.880	1.585	0.426	-0.904

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1aa6_*_424	1aa6	-	424	437	LVIVQDIFMTKTAS	EEEEEESB--HHHH	bbbbbbabxxaaaa
1dmr_*_454	1dmr	-	454	467	TFVVHDFQWTPTAR	EEEEEESB--HHHH	bbbbbbabxxaaaa
1eu1_A_454	1eu1	A	454	467	TFIVQDFQWTATAR	EEEEEESB--HHHH	bbbbbbabxxaaaa
1kqf_A_254	1kqf	A	254	267	TLIVVDPRFTRTAS	EEEEE-SS--HHHH	bbbbbbabxxaaaa
1q16_A_767	1q16	A	767	780	LVVTLDFRLSSTCL	EEEEEESB--HHHH	bbbbbbabxxaaaa
1tmo_*_463	1tmo	-	463	476	CVVTVDVNWTATCR	EEEEEESB--HHHH	bbbbbbabxxaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1aa6_*_424	1aa6	*	MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE	Q - 428
1aa6_*_424	1aa6	*	MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE	D - 429
1aa6_*_424	1aa6	*	MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE	I - 430
1aa6_*_424	1aa6	*	MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE	F - 431
1aa6_*_424	1aa6	*	MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE	T - 433
1dmr_*_454	1dmr	*	PGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE	H - 458
1dmr_*_454	1dmr	*	PGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE	D - 459
1dmr_*_454	1dmr	*	OOXYGEN ATOM	D - 459
1dmr_*_454	1dmr	*	PGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE	F - 460
1dmr_*_454	1dmr	*	OOXYGEN ATOM	F - 460
1dmr_*_454	1dmr	*	PGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE	Q - 461
1dmr_*_454	1dmr	*	OOXYGEN ATOM	Q - 461
1dmr_*_454	1dmr	*	PGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE	T - 463
1dmr_*_454	1dmr	*	OOXYGEN ATOM	T - 463
1eu1_A_454	1eu1	A	MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE	Q - 458
1eu1_A_454	1eu1	A	MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE	D - 459
1eu1_A_454	1eu1	A	MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE	F - 460
1eu1_A_454	1eu1	A	MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE	Q - 461
1eu1_A_454	1eu1	A	MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE	T - 463
1kqf_A_254	1kqf	A	MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE	V - 258
1kqf_A_254	1kqf	A	MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE	D - 259
1kqf_A_254	1kqf	A	MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE	P - 260
1kqf_A_254	1kqf	A	MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE	R - 261
1kqf_A_254	1kqf	A	MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE	T - 263
1tmo_*_463	1tmo	*	2MDGUANYLATE-O'-PHOSPHORIC ACID MONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,5,6,7,8A,9,10,10A-OCTAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL) ESTER	V - 467
1tmo_*_463	1tmo	*	2MDGUANYLATE-O'-PHOSPHORIC ACID MONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,5,6,7,8A,9,10,10A-OCTAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL) ESTER	D - 468
1tmo_*_463	1tmo	*	2MDGUANYLATE-O'-PHOSPHORIC ACID MONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,5,6,7,8A,9,10,10A-OCTAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL) ESTER	V - 469
1tmo_*_463	1tmo	*	2MDGUANYLATE-O'-PHOSPHORIC ACID MONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,5,6,7,8A,9,10,10A-OCTAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL) ESTER	N - 470
1tmo_*_463	1tmo	*	2MDGUANYLATE-O'-PHOSPHORIC ACID MONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,5,6,7,8A,9,10,10A-OCTAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL) ESTER	T - 472

Clusters included in this Subclass

CLUSTER: EH.4.159

CLUSTER: EH.5.58