Information on SUBCLASS 2.2.9 |
Subclass Accession number: 6054
Subclass: 2.2.9 Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 12 Average sequence ID (%) : 5.8 +/- 9.0 Average RMSD (Å) : 0.600 +/- 0.154 Consensus geometry
|
Consensus Sequence: | XXXXXX |
(φψ)-conformation: | bbaabb |
Pattern: | [ACFIKV] | x | x | x | x | x | x | x | x | x | x |
Conservation: | 1.840 | -0.090 | -0.120 | -1.356 | 0.115 | 1.633 | 0.350 | -1.213 | -0.249 | -0.462 | -0.447 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1a1x_*_29 | 1a1x | - | 33 | 43 | VVEEETSFLRA | EEEE-SS-EEE | bxbxxaabbbb |
1cbs_*_49 | 1cbs | - | 52 | 62 | IKTSTTVRTTE | EEEE-SS-EEE | bbbbbaabbbb |
1i7q_A_383 | 1i7q | A | 389 | 399 | KVDRYSFVMHL | EEEE-SS-EEE | bbbbbaabbbx |
1iil_E_338 | 1iil | E | 342 | 352 | CLAGNSIGISF | EEEE-SS-EEE | bbbbbaabbbb |
1jey_B_404 | 1jey | B | 409 | 419 | FPHIKHNYECL | EEEE-SS-EEE | bwbbbaabbbb |
1jsm_A_198 | 1jsm | A | 198 | 208 | VSVGTSTLNQR | EEEE-SS-EEE | bbbbbaaxbbb |
1kuu_A_112 | 1kuu | A | 114 | 124 | AAAINGSEAFI | EEEE-SS-EEE | bbbbbaabbbb |
1lid_*_48 | 1lid | - | 51 | 61 | IRSESTFKNTE | EEEE-SS-EEE | bbbbbaabbbb |
1mzu_A_89 | 1mzu | A | 94 | 104 | FVFDFQMAPVR | EEEE-SS-EEE | bbxxxaabwbx |
1p3c_A_22 | 1p3c | A | 23 | 33 | AYITFGGSSCT | EEEE-SS-EEE | bxbbbaabbbb |
1q1j_H_88 | 1q1j | H | 98 | 108 | IMIRGVSEDYY | EEEE-SS-EEE | bbbxxaabbxb |
2cd0_A_84 | 2cd0 | A | 88 | 98 | CQSYDHNNQVF | EEEEETTEEEE | xbbbbaabbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1cbs_*_49 | 1cbs | * | REARETINOIC ACID | T - 54 |
1cbs_*_49 | 1cbs | * | REARETINOIC ACID | S - 55 |
1cbs_*_49 | 1cbs | * | REARETINOIC ACID | T - 56 |
1cbs_*_49 | 1cbs | * | REARETINOIC ACID | V - 58 |
1cbs_*_49 | 1cbs | * | REARETINOIC ACID | R - 59 |
1i7q_A_383 | 1i7q | A | BEZBENZOIC ACID | H - 398 |
1i7q_A_383 | 1i7q | A | PYRPYRUVIC ACID | H - 398 |
1jsm_A_198 | 1jsm | A | NAGN-ACETYL-D-GLUCOSAMINE | S - 203 |
1lid_*_48 | 1lid | * | OLAOLEIC ACID | S - 53 |
1lid_*_48 | 1lid | * | OLAOLEIC ACID | S - 55 |
1lid_*_48 | 1lid | * | OLAOLEIC ACID | F - 57 |
1lid_*_48 | 1lid | * | OLAOLEIC ACID | K - 58 |
1mzu_A_89 | 1mzu | A | HC44'-HYDROXYCINNAMIC ACID | F - 96 |
1mzu_A_89 | 1mzu | A | HC44'-HYDROXYCINNAMIC ACID | D - 97 |
1mzu_A_89 | 1mzu | A | HC44'-HYDROXYCINNAMIC ACID | F - 98 |
Clusters included in this Subclass |
CLUSTER: HA.3.91 |
CLUSTER: HA.4.118 |
CLUSTER: HA.5.157 |