Information on SUBCLASS 0.1.34 |
Subclass Accession number: 34
Subclass: 0.1.34 Type: HE alpha-beta DB: ArchDB40 Image coordinates: Consensus coordinates: Conserved Annotation EC : 1 (>50 %) 3.4 (>75 %) 3.4.22 (>75 %) GO : GO:0004175 (>75 %) GO:0004197 (>75 %) GO:0008233 (>75 %) GO:0008234 (>75 %) SCOP : 54000 (>75 %) 54001 (>75 %) 54002 (>75 %) |
Number of loops: 3 Average sequence ID (%) : 9.8 +/- 10.3 Average RMSD (Å) : 0.533 +/- 0.153 Consensus geometry
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Consensus Sequence: | XpXX |
(φψ)-conformation: | aabp |
Pattern: | [KRY] | [LPV] | [AGS] | x | x | [LWY] | [AFG] | x | [AFL] | x | [S] | x | [DQY] | [ANV] | [EPR] | [NV] | x |
Conservation: | 0.226 | -0.536 | 0.608 | -0.790 | -0.409 | 1.116 | -0.663 | -0.790 | -0.409 | 0.192 | 3.149 | -0.409 | -0.155 | -0.917 | -0.028 | -0.185 | -1.000 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1dlj_A_10 | 1dlj | A | 10 | 26 | YVGLSLGVLLSLQNEVT | HHHHHHHHHHTTTSEEE | aaaaaaaaaaaaabxbb |
1obd_A_53 | 1obd | A | 59 | 74 | KLSEFWFKFLSNDVRN. | HHHHHHHHHTTTT-EE. | aaaaaaaaaaaaabxb. |
1qe3_A_364 | 1qe3 | A | 365 | 381 | RPAVAYASAQSHYAPVW | HHHHHHHHHHTTTS-EE | aaaaaaaaaaaaabwbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1dlj_A_10 | 1dlj | A | NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE | Y - 10 |
1dlj_A_10 | 1dlj | A | NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE | V - 11 |
1dlj_A_10 | 1dlj | A | NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE | G - 12 |
1dlj_A_10 | 1dlj | A | NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE | V - 28 |
1obd_A_53 | 1obd | A | MGMAGNESIUM ION | L - 57 |
1obd_A_53 | 1obd | A | MGMAGNESIUM ION | T - 58 |
1obd_A_53 | 1obd | A | AMPADENOSINE MONOPHOSPHATE | K - 59 |
1obd_A_53 | 1obd | A | MGMAGNESIUM ION | S - 61 |
1obd_A_53 | 1obd | A | AMPADENOSINE MONOPHOSPHATE | E - 62 |
1obd_A_53 | 1obd | A | MGMAGNESIUM ION | F - 65 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1obd_A_53 | 1obd | A | AC6MG BINDING SITE FOR CHAIN A | S - 61 |
1obd_A_53 | 1obd | A | AC7AMP BINDING SITE FOR CHAIN A | E - 62 |
1obd_A_53 | 1obd | A | AC4SO4 BINDING SITE FOR CHAIN A | R - 73 |
1obd_A_53 | 1obd | A | AC4SO4 BINDING SITE FOR CHAIN A | N - 74 |
Clusters included in this Subclass |
CLUSTER: HE.4.111 |