Logo
Information on SUBCLASS 2.4.13
Subclass Accession number: 5399
Subclass: 2.4.13 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 13.3 +/- 13.6
Average RMSD (Å) : 0.767 +/- 0.153

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 90-135 rho (°): 135-180
Consensus Sequence: XpcphL
(φψ)-conformation: aalaba
Pattern: x[ADV]x[LMV][EKM][HQ]xxx[ENR][GN][ER][GLY][L]x
Conservation:-0.930-0.842-0.4910.650-0.2271.249-0.930-0.579-0.4910.2111.3840.975-1.1051.967-0.842
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1j3b_A_211j3b   A2236PVLVEHTLLRGEGLLHHHHHHHHHTTS-EEaaaaaaaaaavabbx
1kgd_A_7881kgd   A788802HDQMMQDISNNEYLEHHHHHHHHHTT-EEEaaaaaaaaaalabab
1mwq_A_211mwq   A2539LARLKQLQAENRLLTHHHHHHHHHTT-EEEaaaaaaaaaalabab
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1j3b_A_211j3b   A     PO4PHOSPHATE ION S - 21
1j3b_A_211j3b   A     PO4PHOSPHATE ION P - 22
1kgd_A_7881kgd   A     FMTFORMIC ACID E - 802
1kgd_A_7881kgd   A     FMTFORMIC ACID Y - 803
1kgd_A_7881kgd   A     FMTFORMIC ACID G - 804
1mwq_A_211mwq   A     ZNZINC ION R - 21
1mwq_A_211mwq   A     1PEPENTAETHYLENE GLYCOL R - 21
1mwq_A_211mwq   A     1PEPENTAETHYLENE GLYCOL E - 22
1mwq_A_211mwq   A     1PEPENTAETHYLENE GLYCOL Q - 23
1mwq_A_211mwq   A     ZNZINC ION H - 24
1mwq_A_211mwq   A     ZNZINC ION L - 25
1mwq_A_211mwq   A     1PEPENTAETHYLENE GLYCOL L - 25
1mwq_A_211mwq   A     1PEPENTAETHYLENE GLYCOL A - 26
1mwq_A_211mwq   A     ZNZINC ION L - 28
1mwq_A_211mwq   A     1PEPENTAETHYLENE GLYCOL K - 29
1mwq_A_211mwq   A     CACCACODYLATE ION N - 35
1mwq_A_211mwq   A     ZNZINC ION R - 36
1mwq_A_211mwq   A     CACCACODYLATE ION R - 36
1mwq_A_211mwq   A     CACCACODYLATE ION L - 37
1mwq_A_211mwq   A     CACCACODYLATE ION L - 38
1mwq_A_211mwq   A     ZNZINC ION A - 40
1mwq_A_211mwq   A     ZNZINC ION G - 41
1mwq_A_211mwq   A     ZNZINC ION P - 42
1mwq_A_211mwq   A     MSESELENOMETHIONINE P - 44

Clusters included in this Subclass
CLUSTER: HE.3.185