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Information on SUBCLASS 2.1.12
Subclass Accession number: 2171
Subclass: 2.1.12 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 8

Average sequence ID (%) : 9.5 +/- 11.2
Average RMSD (Å) : 0.487 +/- 0.125

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 45-90
Consensus Sequence: pXXXXX
(φψ)-conformation: aappaa
Pattern: [fhivw]x[ADEQT]xx[DGPST]xxx[AFIKLV][aenrs][egkqr]
Conservation:-0.284-1.5721.162-0.617-2.0491.0610.369-0.0270.8030.5670.5360.053
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1b3u_A_3881b3u   A390401VNEVIGIRQLSQHHHHS-HHHHHHaaaabxaaaaaa
1bf6_A_921bf6   A92103HVATRSVQELAQHHHHS-HHHHHHaaaaxxaaaaaa
1buc_A_981buc   A101112IWQFGTEAQKEKHHHH--HHHHHHaaaaxxaaaaaa
1h32_B_671h32   B6778VAARYPEAMIRGHHHHS-HHHHHHaaaabxaaaaaa
1j33_A_2181j33   A222233AAEVGGIELVAIHHHHS-HHHHHHaaaaxbaaaaaa
1jtv_A_2001jtv   A203214VLDRTDIHTFHRHHHTS-HHHHHHaaaabxaaaaaa
1kgn_A_951kgn   A119130FMTLASTPQINEHHHHS-HHHHHHaaaaxxaaaaaa
1q44_A_2971q44   A297308WRDTLSESLAEEHHHHS-HHHHHHaaaaxpaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1bf6_A_921bf6   A     GOLGLYCEROL H - 92
1bf6_A_921bf6   A     GOLGLYCEROL R - 96
1bf6_A_921bf6   A     GOLGLYCEROL E - 104
1h32_B_671h32   B     HECHEME C V - 67
1h32_B_671h32   B     HECHEME C R - 70
1h32_B_671h32   B     HECHEME C Y - 71
1h32_B_671h32   B     HECHEME C I - 76
1h32_B_671h32   B     HECHEME C I - 79
1h32_B_671h32   B     HECHEME C L - 80
1jtv_A_2001jtv   A     TESTESTOSTERONE Y - 218
1jtv_A_2001jtv   A     TESTESTOSTERONE H - 221
1jtv_A_2001jtv   A     TESTESTOSTERONE S - 222
1jtv_A_2001jtv   A     TESTESTOSTERONE K - 223
1jtv_A_2001jtv   A     TESTESTOSTERONE V - 225
1jtv_A_2001jtv   A     TESTESTOSTERONE F - 226
1kgn_A_951kgn   A     FEFE (III) ION I - 104
1kgn_A_951kgn   A     OF3FERRIC ION, 1 WATER COORDINATED I - 104
1kgn_A_951kgn   A     FEFE (III) ION M - 107
1kgn_A_951kgn   A     FEFE (III) ION E - 108
1kgn_A_951kgn   A     OF3FERRIC ION, 1 WATER COORDINATED E - 108
1kgn_A_951kgn   A     FEFE (III) ION H - 111
1kgn_A_951kgn   A     OF3FERRIC ION, 1 WATER COORDINATED H - 111
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1h32_B_671h32   B HB1HEC BINDING SITE FOR CHAIN BR - 70
1h32_B_671h32   B HB1HEC BINDING SITE FOR CHAIN BY - 71
1h32_B_671h32   B HB1HEC BINDING SITE FOR CHAIN BI - 79

Clusters included in this Subclass
CLUSTER: HH.2.75