ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 6.1.2

Subclass Accession number: 4938
Subclass: 6.1.2

Type: HH alpha-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Number of loops: 5

Average sequence ID (%) : 31.2 +/- 35.0
Average RMSD (Å) : 0.620 +/- 0.449

Consensus geometry

d (Å): 13

delta (°): 45-90

theta (°): 135-180

rho (°): 180-225

Consensus Sequence:	hccpXhhXhX
(φψ)-conformation:	aalabpbpaa

Pattern:	[DEKT]	[ADGPQ]	[IV]	[LV]	[DKN]	[DEG]	[DEKQS]	x	[PY]	[CVY]	[DPS]	[AFP]	[ADE]	[AKQT]	[ai]	[CKV]	[AEL]	x	[AV]	[EGS]	[VY]	x	[CKV]	[QT]	[ail]	[KQS]
Conservation:	-0.232	-1.298	2.315	1.379	0.895	0.259	-0.039	-1.123	0.769	0.153	0.142	-1.022	0.187	-0.676	-0.247	-0.860	-1.217	-1.048	0.911	-0.165	1.973	-0.879	-0.860	1.060	-0.848	0.469

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1e85_A_27	1e85	A	27	52	TPVVKGQAPYDAAQIKANVEVLKTLS	HHHHTTSS---HHHHHHHHHHHHHHH	aaaaavabxxbaaaaaaaaaaaaaaa
1ef1_A_96	1ef1	A	108	133	EGILNDDIYCPPETAVLLASYAVQSK	HHHHTTSS---HHHHHHHHHHHHHHH	aaaaavabpbxaaaaaaaaaaaaaaa
1h4r_A_112	1h4r	A	124	149	KQILDEKIYCPPEASVLLASYAVQAK	HHHHTTSS---HHHHHHHHHHHHHHH	aaaaavabpbxaaaaaaaaaaaaaaa
1j19_A_96	1j19	A	108	133	EAILNDEIYCPPETAVLLASYAVQAK	HHHHTTSS---HHHHHHHHHHHHHHH	aaaaavabxbxaaaaaaaaaaaaaaa
1mix_A_209	1mix	A	221	246	DDILNGSHPVSFDKACEFAGYQCQIQ	HHHHTTSS---HHHHHHHHHHHHHHH	aaaaavabwbxaaaaaaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Clusters included in this Subclass