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Information on SUBCLASS 3.8.3
Subclass Accession number: 1188
Subclass: 3.8.3 PSSM
Type: EH beta-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 5

Average sequence ID (%) : 18.1 +/- 17.3
Average RMSD (Å) : 0.780 +/- 0.192

Consensus geometry
d (Å): 9 delta (°): 0-45 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: XhXccXX
(φψ)-conformation: bbppbaa
Pattern: [AGV][GIY][ft]x[gy]x[AILV][prs][DEN][DNS][EKP][ekl][AEGS][ail][akm][AV][AEL][fgi][ehry][EKL][ANR]
Conservation:-0.235-0.4590.2330.0270.022-1.0770.768-0.6762.2721.8180.835-0.9700.080-0.930-0.1661.688-0.430-1.601-0.863-0.3550.020
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1g8l_A_2191g8l   A220240VINLGIIRDDPHALRAAFIEAEEEEEEE-S-HHHHHHHHHHHxbxaexxxxbaaaaaaaaaaa
1j5v_A_491j5v   A4969AYFVTKLPNNPLGDAAAGHLREEEEEEE-SSHHHHHHHHHHHxbbbbbbxxbaaaaaaaaaaa
1the_A_1471the   A147167GYTSYSVSDSEKEIMAEIYKNEEEEEEE-S-HHHHHHHHHHHxabbbxbxxbaaaaaaaaaaa
1uz5_A_2221uz5   A223243GIFMGVARDDKESLKALIEKAEEEEEEE-SSHHHHHHHHHHHxbxaebbxxbaaaaaaaaaaa
1v1a_A_501v1a   A5070VGFVGRVGEDELGAMVEERLREEEEEEE-SSHHHHHHHHHHHbbbbbbbpxbaaaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1g8l_A_2191g8l   A     GOLGLYCEROL E - 219
1g8l_A_2191g8l   A     GOLGLYCEROL D - 228
1g8l_A_2191g8l   A     GOLGLYCEROL D - 229
1g8l_A_2191g8l   A     GOLGLYCEROL P - 230
1g8l_A_2191g8l   A     GOLGLYCEROL H - 231
1j5v_A_491j5v   A     MSESELENOMETHIONINE A - 49
1j5v_A_491j5v   A     2OFFERROUS ION, 2 WATERS COORDINATED Y - 50
1j5v_A_491j5v   A     NINICKEL (II) ION A - 63
1j5v_A_491j5v   A     NI3NICKEL (II) ION, 3 WATERS COORDINATED A - 63
1j5v_A_491j5v   A     MSESELENOMETHIONINE A - 64
1j5v_A_491j5v   A     NINICKEL (II) ION G - 66
1j5v_A_491j5v   A     NI3NICKEL (II) ION, 3 WATERS COORDINATED G - 66
1j5v_A_491j5v   A     NINICKEL (II) ION H - 67
1j5v_A_491j5v   A     NI3NICKEL (II) ION, 3 WATERS COORDINATED H - 67
1j5v_A_491j5v   A     NINICKEL (II) ION L - 68
1j5v_A_491j5v   A     NI3NICKEL (II) ION, 3 WATERS COORDINATED L - 68
1j5v_A_491j5v   A     NINICKEL (II) ION K - 70
1j5v_A_491j5v   A     NI3NICKEL (II) ION, 3 WATERS COORDINATED K - 70
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1uz5_A_2221uz5   A AC3SO4 BINDING SITE FOR CHAIN AG - 223
1uz5_A_2221uz5   A AC3SO4 BINDING SITE FOR CHAIN AF - 225
1uz5_A_2221uz5   A AC5SO4 BINDING SITE FOR CHAIN AD - 231

Clusters included in this Subclass
CLUSTER: EH.2.205
CLUSTER: EH.4.160