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Information on SUBCLASS 2.2.8
Subclass Accession number: 128
Subclass: 2.2.8 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 4

Average sequence ID (%) : 22.8 +/- 18.1
Average RMSD (Å) : 0.750 +/- 0.191

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: pXGXpV
(φψ)-conformation: aagpbb
Pattern: [AKLM]x[AG][AEGR]x[ACIL][AF]x[EHK][L][EK][HKRS]x[GN]x[HKT][PV]x[IVW]
Conservation:-0.817-0.4310.840-0.928-0.928-0.4310.116-0.3810.4962.1661.596-0.265-1.0691.817-0.208-0.2910.236-1.480-0.040
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1auo_A_1731auo   A174192AMGRSAFEHLKSRGVTVTWHHHHHHHHHHHTTT--EEEaaaaaaaaaaaaavxxbbb
1i8t_A_111i8t   A1129LFGAVCANELKKLNKKVLVHHHHHHHHHHGGGT--EEEaaaaaaaaaaaaavxxbbb
1j0a_A_1331j0a   A135153KYAEEIAEELKREGRKPYVHHHHHHHHHHTTSS--EEEaaaaaaaaaaaaaGpbbbb
1squ_A_831squ   A95113MTAGKLAMKLEHLGKHVDIHHHHHHHHHHHTTS--EEEaaaaaaaaaaaaagxbbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1i8t_A_111i8t   A     FADFLAVIN-ADENINE DINUCLEOTIDE L - 11
1i8t_A_111i8t   A     FADFLAVIN-ADENINE DINUCLEOTIDE F - 12
1i8t_A_111i8t   A     FADFLAVIN-ADENINE DINUCLEOTIDE G - 13
1i8t_A_111i8t   A     FADFLAVIN-ADENINE DINUCLEOTIDE I - 30

Clusters included in this Subclass
CLUSTER: HE.6.65