Information on SUBCLASS 2.2.8 |
Subclass Accession number: 128
Subclass: 2.2.8 Type: HE alpha-beta DB: ArchDB40 Image coordinates: Consensus coordinates: |
Number of loops: 4 Average sequence ID (%) : 22.8 +/- 18.1 Average RMSD (Å) : 0.750 +/- 0.191 Consensus geometry
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Consensus Sequence: | pXGXpV |
(φψ)-conformation: | aagpbb |
Pattern: | [AKLM] | x | [AG] | [AEGR] | x | [ACIL] | [AF] | x | [EHK] | [L] | [EK] | [HKRS] | x | [GN] | x | [HKT] | [PV] | x | [IVW] |
Conservation: | -0.817 | -0.431 | 0.840 | -0.928 | -0.928 | -0.431 | 0.116 | -0.381 | 0.496 | 2.166 | 1.596 | -0.265 | -1.069 | 1.817 | -0.208 | -0.291 | 0.236 | -1.480 | -0.040 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1auo_A_173 | 1auo | A | 174 | 192 | AMGRSAFEHLKSRGVTVTW | HHHHHHHHHHHTTT--EEE | aaaaaaaaaaaaavxxbbb |
1i8t_A_11 | 1i8t | A | 11 | 29 | LFGAVCANELKKLNKKVLV | HHHHHHHHHHGGGT--EEE | aaaaaaaaaaaaavxxbbb |
1j0a_A_133 | 1j0a | A | 135 | 153 | KYAEEIAEELKREGRKPYV | HHHHHHHHHHTTSS--EEE | aaaaaaaaaaaaaGpbbbb |
1squ_A_83 | 1squ | A | 95 | 113 | MTAGKLAMKLEHLGKHVDI | HHHHHHHHHHHTTS--EEE | aaaaaaaaaaaaagxbbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1i8t_A_11 | 1i8t | A | FADFLAVIN-ADENINE DINUCLEOTIDE | L - 11 |
1i8t_A_11 | 1i8t | A | FADFLAVIN-ADENINE DINUCLEOTIDE | F - 12 |
1i8t_A_11 | 1i8t | A | FADFLAVIN-ADENINE DINUCLEOTIDE | G - 13 |
1i8t_A_11 | 1i8t | A | FADFLAVIN-ADENINE DINUCLEOTIDE | I - 30 |
Clusters included in this Subclass |
CLUSTER: HE.6.65 |