ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 0.1.17

Subclass Accession number: 17
Subclass: 0.1.17

PSSM

Type: HE alpha-beta
DB: ArchDB40

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 6

Average sequence ID (%) : 5.8 +/- 9.6
Average RMSD (Å) : 0.533 +/- 0.242

Consensus geometry

d (Å): 5

delta (°): 90-135

theta (°): 90-135

rho (°): 90-135

Consensus Sequence:	hXXX
(φψ)-conformation:	aabb

Pattern:	x	x	[aiv]	x	x	[dhknp]	x	x
Conservation:	-0.166	-1.077	2.030	-0.609	0.332	-0.458	-0.052	-1.000

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1g62_A_13	1g62	A	13	19	IGVFSKL.	HHHHEEE.	aaaabbb.
1g9m_G_369	1g9m	G	369	376	PEIVTHSF	HHHHTEEE	aaaabxxb
1h7s_A_110	1h7s	A	114	121	LCALSDVT	HHHHSEEE	aaaabbbb
1kl1_A_131	1kl1	A	132	139	SGVQYNFV	HHHHSEEE	aaaabxxb
1o54_A_204	1o54	A	213	220	KLQELPFI	HHHHSSEE	aaaabxbb
1p2z_A_407	1p2z	A	407	413	PDVRIIE.	HHHHSEE.	aaaabxb.

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1g9m_G_369	1g9m	G	IOH2-PROPANOL, ISOPROPANOL	E - 370
1g9m_G_369	1g9m	G	NAGN-ACETYL-D-GLUCOSAMINE	V - 372
1g9m_G_369	1g9m	G	NAGN-ACETYL-D-GLUCOSAMINE	T - 373
1g9m_G_369	1g9m	G	IOH2-PROPANOL, ISOPROPANOL	S - 375
1g9m_G_369	1g9m	G	IOH2-PROPANOL, ISOPROPANOL	F - 376
1g9m_G_369	1g9m	G	NAGN-ACETYL-D-GLUCOSAMINE	N - 377
1g9m_G_369	1g9m	G	IOH2-PROPANOL, ISOPROPANOL	N - 377
1h7s_A_110	1h7s	A	MSESELENOMETHIONINE	V - 120
1h7s_A_110	1h7s	A	MSESELENOMETHIONINE	T - 121
1h7s_A_110	1h7s	A	MSESELENOMETHIONINE	I - 122

Clusters included in this Subclass

CLUSTER: HE.0.17

CLUSTER: HE.1.27