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Information on SUBCLASS 5.6.1
Subclass Accession number: 1879
Subclass: 5.6.1 PSSM
Type: AR beta-beta link
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : 3.4.23 (>75 %)  
GO : GO:0004190 (>75 %)  
SCOP : 48942 (>50 %)  50629 (>75 %)  50630 (>75 %)  50646 (>75 %)  
 Number of loops: 13

Average sequence ID (%) : 10.0 +/- 13.0
Average RMSD (Å) : 0.700 +/- 0.392

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 225-270
Consensus Sequence: ppXXpXXXX
(φψ)-conformation: bbapabpbb
Pattern: [afilmv][ehqrsty][cnrsty]x[ADGKQST][DHKNPQS]xxxx
Conservation:1.438-0.5181.600-0.8350.4940.865-0.751-1.004-0.717-0.572
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ifr_A_4511ifr   A454463LRNKSNEDQSEEE-SSS-EEbbxaxabxbx
1l0q_A_3451l0q   A345353.SSKKQNPTH.EE-SSS-EE.bbaxabxbb
1m7x_A_6501m7x   A654663ASNFTPVPRHEEE-SS--EEbbbabaxwbb
1mjs_A_2471mjs   A247256FHASQPSMTVEEE-SSEEEExbxababbbb
1mjs_A_3011mjs   A304313AECLSDSAIFEEE-SSS-EEbbxaxabxbb
1nbc_A_201nbc   A2433VTNTGSSAIDEEE-SSS-EEbbxaxabpbx
1ogm_X_2801ogm   X280289IEYFTKQNFYEEE--SS-EEbbxaxabpbb
1poc_*_501poc   -5059LTNTASHTRLEE--SSS-EEbbxaxabxbb
1q5h_A_871q5h   A9099LFNFGKEKFEEEE-SSS-EExbbaxabpbb
1qwt_A_2801qwt   A283292AQRLGHCHTYEEE-SSS-EEbbxaxaxxbb
1snz_A_2671snz   A271280VYTTQPGVQFEEESSSEEEEbbbaxabbxb
1vj2_A_921vj2   A94103FRNDTDSEVEEE--SSS-EEbbbababxbb
2viu_A_1642viu   A168177MPNNDNFDKLEE--SSS-EEbxxaxabxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1poc_*_501poc   *     GEL1-O-OCTYL-2-HEPTYLPHOSPHONYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE H - 56
1poc_*_501poc   *     GEL1-O-OCTYL-2-HEPTYLPHOSPHONYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE T - 57
1poc_*_501poc   *     GEL1-O-OCTYL-2-HEPTYLPHOSPHONYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE R - 58
1poc_*_501poc   *     GEL1-O-OCTYL-2-HEPTYLPHOSPHONYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE L - 59
1q5h_A_871q5h   A     DUDDEOXYURIDINE-5'-DIPHOSPHATE G - 87
1q5h_A_871q5h   A     DUDDEOXYURIDINE-5'-DIPHOSPHATE V - 88
1q5h_A_871q5h   A     DUDDEOXYURIDINE-5'-DIPHOSPHATE V - 89
1qwt_A_2801qwt   A     PO4PHOSPHATE ION L - 281
1qwt_A_2801qwt   A     PO4PHOSPHATE ION Q - 284
1qwt_A_2801qwt   A     PO4PHOSPHATE ION G - 287
1qwt_A_2801qwt   A     PO4PHOSPHATE ION H - 288
1vj2_A_921vj2   A     MNMANGANESE (II) ION H - 92
1vj2_A_921vj2   A     MNMANGANESE (II) ION F - 94
2viu_A_1642viu   A     NAGN-ACETYL-D-GLUCOSAMINE N - 165
2viu_A_1642viu   A     NAGN-ACETYL-D-GLUCOSAMINE V - 166
2viu_A_1642viu   A     NAGN-ACETYL-D-GLUCOSAMINE T - 167

Clusters included in this Subclass
CLUSTER: AR.4.102
CLUSTER: AR.5.39
CLUSTER: AR.6.9