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Information on SUBCLASS 5.6.2
Subclass Accession number: 1880
Subclass: 5.6.2 PSSM
Type: AR beta-beta link
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
SCOP : 51181 (>75 %)  51182 (>50 %)  51187 (>50 %)  
 Number of loops: 3

Average sequence ID (%) : 10.3 +/- 14.8
Average RMSD (Å) : 1.067 +/- 0.208

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 90-135 rho (°): 45-90
Consensus Sequence: XXpXpphXX
(φψ)-conformation: bbapabpbb
Pattern: [RY][IVW][LTV]xx[KT]x[DHT][ENT][ALP]x[SV][ADS]
Conservation:2.0300.1000.1000.466-1.7291.422-0.083-0.2660.283-1.364-0.771-0.104-0.083
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1od5_A_1311od5   A131143YWTYNTGDEPVVAEEEEE-SSS-EEEbbbbxaxaxxxbb
1od5_A_4291od5   A441453YVVFKTHHNAVSSEEEEESSTT--EEbbbxbababxbbb
1su4_A_1621su4   A164176RILSIKSTTLRVDEEEEE-SS--EEExxabxaxabbbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1od5_A_1311od5   A     CO3CARBONATE ION Y - 131
1od5_A_1311od5   A     CO3CARBONATE ION W - 132
1od5_A_1311od5   A     CO3CARBONATE ION T - 133
1od5_A_1311od5   A     CO3CARBONATE ION V - 141
1od5_A_1311od5   A     CO3CARBONATE ION A - 143
1od5_A_4291od5   A     MGMAGNESIUM ION V - 430
1od5_A_4291od5   A     MGMAGNESIUM ION E - 432
1od5_A_4291od5   A     MGMAGNESIUM ION Y - 441
1od5_A_4291od5   A     MGMAGNESIUM ION V - 443
1od5_A_4291od5   A     MGMAGNESIUM ION K - 445
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1od5_A_1311od5   A AC1CO3 BINDING SITE FOR CHAIN AY - 131
1od5_A_1311od5   A AC1CO3 BINDING SITE FOR CHAIN AT - 133
1od5_A_4291od5   A AC4MG BINDING SITE FOR CHAIN BE - 432
1od5_A_4291od5   A AC4MG BINDING SITE FOR CHAIN BY - 441

Clusters included in this Subclass
CLUSTER: AR.6.77