ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 9.4.1

Subclass Accession number: 192
Subclass: 9.4.1
Type: HH alpha-alpha
DB: ArchDB-KI

Number of loops: 4

Average sequence ID (%) : 100.0 +/- 0.0
Average RMSD (Å) : 0.33 +/- 0.09

Consensus geometry

d (Å): 13

delta (°): 90-135

theta (°): 90-135

rho (°): 315-360

Consensus Sequence:	AKRQRPGERLDLA
(φψ)-conformation:	aabbppgpbpbaa

Pattern:	[E]	[D]	[R]	[H]	[I]	[D]	[R]	[L]	[A]	[K]	[R]	[Q]	[R]	[P]	[G]	[E]	[R]	[L]	[D]	[L]	[A]	[M]	[L]	[A]	[A]	[I]	[R]	[R]	[V]	[Y]	[G]	[L]	[L]	[A]	[N]	[T]	[V]	[R]	[Y]	[L]	[Q]
Conservation:	0.024	0.988	0.024	2.918	-0.941	0.988	0.024	-0.941	-0.941	0.024	0.024	0.024	0.024	1.953	0.988	0.024	0.024	-0.941	0.988	-0.941	-0.941	0.024	-0.941	-0.941	-0.941	-0.941	0.024	0.024	-0.941	1.953	0.988	-0.941	-0.941	-0.941	0.988	0.024	-0.941	0.024	1.953	-0.941	0.024

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1kim_A_210	1kim	A	210	250	EDRHIDRLAKRQRPGERLDLAMLAAIRRVYGLLANTVRYLQ	HHHHHHHHHH---TT----HHHHHHHHHHHHHHHHHHHHHH	aaaaaaaaaabbxpgxbpbaaaaaaaaaaaaaaaaaaaaaa
1qhi_A_210	1qhi	A	210	250	EDRHIDRLAKRQRPGERLDLAMLAAIRRVYGLLANTVRYLQ	HHHHHHHHHH---TT----HHHHHHHHHHHHHHHHHHHHHH	aaaaaaaaaabxxpvxbxbaaaaaaaaaaaaaaaaaaaaaa
1vtk_*_210	1vtk	-	210	250	EDRHIDRLAKRQRPGERLDLAMLAAIRRVYGLLANTVRYLQ	HHHHHHHHHH---TT----HHHHHHHHHHHHHHHHHHHHHH	aaaaaaaaaaxbxxvxbxbaaaaaaaaaaaaaaaaaaaaaa
2ki5_A_210	2ki5	A	210	250	EDRHIDRLAKRQRPGERLDLAMLAAIRRVYGLLANTVRYLQ	HHHHHHHHHHS--TT----HHHHHHHHHHHHHHHHHHHHHH	aaaaaaaaaabbxxvxbxbaaaaaaaaaaaaaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1kim_A_210	1kim	A	THMTHYMIDINE	R - 222
1kim_A_210	1kim	A	THMTHYMIDINE	E - 225
1kim_A_210	1kim	A	THMTHYMIDINE	M - 231
1vtk_*_210	1vtk	*	ADPADENOSINE-5'-DIPHOSPHATE	R - 212
1vtk_*_210	1vtk	*	ADPADENOSINE-5'-DIPHOSPHATE	R - 216
1vtk_*_210	1vtk	*	ADPADENOSINE-5'-DIPHOSPHATE	L - 217
1vtk_*_210	1vtk	*	ADPADENOSINE-5'-DIPHOSPHATE	K - 219
1vtk_*_210	1vtk	*	ADPADENOSINE-5'-DIPHOSPHATE	R - 220
1vtk_*_210	1vtk	*	TMPTHYMIDINE-5'-PHOSPHATE	R - 220
1vtk_*_210	1vtk	*	ADPADENOSINE-5'-DIPHOSPHATE	R - 222
1vtk_*_210	1vtk	*	TMPTHYMIDINE-5'-PHOSPHATE	R - 222
1vtk_*_210	1vtk	*	TMPTHYMIDINE-5'-PHOSPHATE	E - 225
1vtk_*_210	1vtk	*	TMPTHYMIDINE-5'-PHOSPHATE	M - 231
2ki5_A_210	2ki5	A	AC29-HYROXYETHOXYMETHYLGUANINE	R - 222
2ki5_A_210	2ki5	A	AC29-HYROXYETHOXYMETHYLGUANINE	E - 225
2ki5_A_210	2ki5	A	AC29-HYROXYETHOXYMETHYLGUANINE	M - 231

Clusters included in this Subclass