Logo
Information on SUBCLASS 1.1.9
Subclass Accession number: 2033
Subclass: 1.1.9 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 16

Average sequence ID (%) : 7.2 +/- 10.6
Average RMSD (Å) : 0.600 +/- 0.200

Consensus geometry
d (Å): 9 delta (°): 0-45 theta (°): 45-90 rho (°): 180-225
Consensus Sequence: hXpXX
(φψ)-conformation: aapaa
Pattern: xxxxxxx[dehknsty][dekpqr]xxx
Conservation:-0.448-1.177-0.7690.394-0.134-0.5450.7960.1982.325-0.889-0.7280.977
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1atg_*_2041atg   -209220QFMSWMKGPKAVHHHHHTTSHHHHaaaaaaaxaaaa
1ax4_A_3061ax4   A314325QGLEEGTEEEYLHHHHHTT-HHHHaaaaaaaxaaaa
1e6b_A_1901e6b   A195206CYESYNELPAFQHHHHHTT-HHHHaaaaaaaxaaaa
1ekj_A_2661ekj   A281292SLGNLLTYPFVRHHHHHTTSHHHHaaaaaaaxaaaa
1f3l_A_2151f3l   A216227VYFSSYGHYGIHHHHHHTSSSHHHaaaaaaaxaaaa
1i9z_A_7611i9z   A761772LSYLFEYDQLNKHHHHHTTBHHHHaaaaaaaxaaaa
1ieg_A_911ieg   A97108VRRASEKSELVSHHHHHTT-HHHHaaaaaaabaaaa
1ivw_A_1021ivw   A108119VEQLLATDERWLHHHHHTT-HHHHaaaaaaaxaaaa
1j1n_A_3261j1n   A331342KFFDFYFSRPGRHHHHHTTSHHHHaaaaaaabaaaa
1k6k_A_271k6k   A3041LLLALLSNPSARHHHHHTT-HHHHaaaaaaaxaaaa
1l7a_A_2351l7a   A242253MKTLSYFDIMNLHHHHHTT-HHHHaaaaaaaxaaaa
1m1n_B_371m1n   B4253EVFQWTTTKEYQHHHHHTTSHHHHaaaaaaaxaaaa
1n3l_A_3061n3l   A323334PIREKFNTPALKHHHHHTTSHHHHaaaaaaaxaaaa
1ntf_A_1921ntf   A192203IDGLMAFDQLKKHHHHHTTBTHHHaaaaaaaxaaaa
1oyj_A_1921oyj   A197208WARRCGRIDSVVHHHHHTTSHHHHaaaaaaaxaaaa
1q8b_A_721q8b   A7485AVKIHFTKKHTIHHHHHTTSHHHHaaaaaaaxaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1atg_*_2041atg   *     EDO1,2-ETHANEDIOL I - 222
1atg_*_2041atg   *     EDO1,2-ETHANEDIOL A - 225
1ekj_A_2661ekj   A     EGLETHYLENE GLYCOL A - 280
1ekj_A_2661ekj   A     EGLETHYLENE GLYCOL N - 284
1f3l_A_2151f3l   A     SAHS-ADENOSYL-L-HOMOCYSTEINE Y - 217
1f3l_A_2151f3l   A     SAHS-ADENOSYL-L-HOMOCYSTEINE F - 218
1f3l_A_2151f3l   A     SAHS-ADENOSYL-L-HOMOCYSTEINE Y - 221
1f3l_A_2151f3l   A     SAHS-ADENOSYL-L-HOMOCYSTEINE H - 227
1f3l_A_2151f3l   A     SAHS-ADENOSYL-L-HOMOCYSTEINE M - 230
1f3l_A_2151f3l   A     SAHS-ADENOSYL-L-HOMOCYSTEINE L - 231
1oyj_A_1921oyj   A     MGMAGNESIUM ION P - 192
1oyj_A_1921oyj   A     MGMAGNESIUM ION R - 193
1oyj_A_1921oyj   A     GOLGLYCEROL L - 194
1oyj_A_1921oyj   A     GOLGLYCEROL A - 195
1oyj_A_1921oyj   A     GOLGLYCEROL A - 196
1oyj_A_1921oyj   A     GOLGLYCEROL A - 198
1oyj_A_1921oyj   A     GOLGLYCEROL R - 199

Clusters included in this Subclass
CLUSTER: HH.2.48
CLUSTER: HH.3.108
CLUSTER: HH.3.141
CLUSTER: HH.4.44