ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 1.2.29

Subclass Accession number: 2107
Subclass: 1.2.29

Type: HH alpha-alpha
DB: ArchDB40

Image coordinates:

Consensus coordinates:

Conserved Annotation
EC : 1 (>75 %)  2 (>75 %)  3 (>75 %)
GO : GO:0008415 (>75 %)  GO:0016746 (>75 %)  GO:0016747 (>75 %)
SCOP : 53473 (>75 %)  53474 (>75 %)  53491 (>75 %)

Number of loops: 3

Average sequence ID (%) : 14.6 +/- 14.5
Average RMSD (Å) : 0.567 +/- 0.153

Consensus geometry

d (Å): 9

delta (°): 45-90

theta (°): 135-180

rho (°): 90-135

Consensus Sequence:	XppPX
(φψ)-conformation:	aabaa

Pattern:	x	x	[SY]	x	[AL]	x	x	x	[DRT]	[ENY]	[P]	x	x	[ASV]	[EL]	x
Conservation:	-0.656	-0.239	0.721	-0.586	0.214	0.006	-0.308	-0.308	-0.308	-0.169	3.516	-0.586	-0.586	-0.169	-0.092	-0.447

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1iuq_A_144	1iuq	A	147	162	IISLLLEKTNPYIAEN	HHHHHHTTT-HHHHHH	aaaaaaaaabaaaaaa
2ahj_A_130	2ahj	A	130	145	FEYRARVVREPRKVLS	HHHHHHTTT-HHHHHH	aaaaaaaaabaaaaaa
3thi_A_320	3thi	A	321	336	QVYEALMQDYPIYSEL	HHHHHHTTT-THHHHH	aaaaaaaaabaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1iuq_A_144	1iuq	A	MSESELENOMETHIONINE	I - 147
2ahj_A_130	2ahj	A	CSD3-SULFINOALANINE	R - 133

Clusters included in this Subclass

CLUSTER: HH.5.220