ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 1.2.39

Subclass Accession number: 2117
Subclass: 1.2.39

Type: HH alpha-alpha
DB: ArchDB40

Image coordinates:

Consensus coordinates:

Conserved Annotation
EC : - (>75 %)  1 (>75 %)  2 (>75 %)  3 (>75 %)
GO : GO:0008415 (>75 %)  GO:0016746 (>75 %)  GO:0016747 (>75 %)
SCOP : 53473 (>75 %)  53474 (>75 %)  53491 (>75 %)

Number of loops: 2

Average sequence ID (%) : 10.0 +/- 0.0
Average RMSD (Å) : 0.900 +/- 0.000

Consensus geometry

d (Å): 9

delta (°): 45-90

theta (°): 135-180

rho (°): 180-225

Consensus Sequence:	PYpXX
(φψ)-conformation:	aabaa

Pattern:	[A]	x	[AV]	[AL]	[ER]	[IK]	[FL]	[AR]	[P]	[Y]	[DH]	[EP]	x	[VY]	[AE]	[EN]	[IK]	[CL]	[HI]	[NY]	[AR]	[AQ]	[KL]	[GV]	[KS]	[LY]	[EQ]	x	[LT]	[KY]
Conservation:	1.131	-0.717	-0.213	-0.549	0.123	-1.053	0.123	-0.381	3.147	3.147	0.459	0.123	-1.053	-0.045	-0.381	0.291	-1.053	0.291	-0.549	-0.045	-0.381	-0.381	-0.717	-0.885	-0.045	-0.045	0.795	-0.549	-0.381	-0.213

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1clc_*_296	1clc	-	307	336	AMAARIFRPYDPQYAEKCINAAKVSYEFLK	HHHHHHHTTT-HHHHHHHHHHHHHHHHHHH	aaaaaaaaaabaaaaaaaaaaaaaaaaaaa
1nk4_A_558	1nk4	A	558	587	ADVLEKLAPYHEIVENILHYRQLGKLQSTY	HHHHHHHGGG-HHHHHHHHHHHHHHHHHHH	aaaaaaaaaabaaaaaaaaaaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1clc_*_296	1clc	*	CACALCIUM ION	A - 297

Clusters included in this Subclass

CLUSTER: HH.4.124