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Information on SUBCLASS 3.2.23
Subclass Accession number: 2297
Subclass: 3.2.23 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 9.5 +/- 10.6
Average RMSD (Å) : 1.067 +/- 0.252

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 0-45
Consensus Sequence: XhGXphp
(φψ)-conformation: aalppaa
Pattern: xxx[CIV][AKT]x[AL][G][HIL][DNS][ILW][DER]x[GIM][AEM][EP][GLW][AFI][AEK]xx
Conservation:-0.571-0.571-1.0180.590-0.214-0.6600.3073.715-0.3930.6790.0540.322-0.571-0.839-0.5710.924-0.660-0.393-0.0350.120-0.214
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1c7q_A_2111c7q   A211231LLPIAVAGLNIDRMMEGAASAHHHHHHTT--HHHHHHHHHHHaaaaaaavxxaaaaaaaaaaa
1ie9_A_2971ie9   A297317VSDVTKAGHSLELIEPLIKFQHHHHHTTT--HHHHHHHHHHHaaaaaaavxbaaaaaaaaaaa
1np7_A_3551np7   A363383SFLCKNLGIDWRWGAEWFESCHHHHHTT-B-HHHHHHHHHHHaaaaaaavxpaaaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ie9_A_2971ie9   A     VDX5-{2-[1-(5-HYDROXY-1,5-DIMETHYL-HEXYL)-7A-METHYL-OCTAHYDRO-INDEN-4-YLIDENE]-ETHYLIDENE}-4-METHYLENE-CYCLOHEXANE-1,3-DIOL V - 300
1ie9_A_2971ie9   A     VDX5-{2-[1-(5-HYDROXY-1,5-DIMETHYL-HEXYL)-7A-METHYL-OCTAHYDRO-INDEN-4-YLIDENE]-ETHYLIDENE}-4-METHYLENE-CYCLOHEXANE-1,3-DIOL A - 303
1ie9_A_2971ie9   A     VDX5-{2-[1-(5-HYDROXY-1,5-DIMETHYL-HEXYL)-7A-METHYL-OCTAHYDRO-INDEN-4-YLIDENE]-ETHYLIDENE}-4-METHYLENE-CYCLOHEXANE-1,3-DIOL H - 305
1ie9_A_2971ie9   A     VDX5-{2-[1-(5-HYDROXY-1,5-DIMETHYL-HEXYL)-7A-METHYL-OCTAHYDRO-INDEN-4-YLIDENE]-ETHYLIDENE}-4-METHYLENE-CYCLOHEXANE-1,3-DIOL L - 309
1ie9_A_2971ie9   A     VDX5-{2-[1-(5-HYDROXY-1,5-DIMETHYL-HEXYL)-7A-METHYL-OCTAHYDRO-INDEN-4-YLIDENE]-ETHYLIDENE}-4-METHYLENE-CYCLOHEXANE-1,3-DIOL L - 313
1ie9_A_2971ie9   A     VDX5-{2-[1-(5-HYDROXY-1,5-DIMETHYL-HEXYL)-7A-METHYL-OCTAHYDRO-INDEN-4-YLIDENE]-ETHYLIDENE}-4-METHYLENE-CYCLOHEXANE-1,3-DIOL Q - 317
1np7_A_3551np7   A     FADFLAVIN-ADENINE DINUCLEOTIDE N - 355
1np7_A_3551np7   A     FADFLAVIN-ADENINE DINUCLEOTIDE R - 356
1np7_A_3551np7   A     FADFLAVIN-ADENINE DINUCLEOTIDE R - 358
1np7_A_3551np7   A     FADFLAVIN-ADENINE DINUCLEOTIDE Q - 359
1np7_A_3551np7   A     FADFLAVIN-ADENINE DINUCLEOTIDE A - 362
1np7_A_3551np7   A     FADFLAVIN-ADENINE DINUCLEOTIDE F - 380

Clusters included in this Subclass
CLUSTER: HH.5.205