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Information on SUBCLASS 3.5.5
Subclass Accession number: 2323
Subclass: 3.5.5 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0005515 (>75 %)  
Number of loops: 4

Average sequence ID (%) : 8.7 +/- 9.9
Average RMSD (Å) : 0.975 +/- 0.206

Consensus geometry
d (Å): 15 delta (°): 45-90 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: XpXpcXX
(φψ)-conformation: aabapaa
Pattern: xxxxxx[AIT][GILV]x[NQT][IKLT][EQT][DN]xx[FKL]x[AER]x[ALMT][EPST]x[ACV]
Conservation:-1.3000.058-0.462-0.345-0.345-0.1440.341-0.504-0.7431.381-0.6630.9093.317-0.425-0.982-0.1440.7970.272-1.380-0.0270.053-0.5040.840
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1dq3_A_3031dq3   A307329LRFYELIGKNLQNEEKREKLEKVHHHHHHTGGG-S-HHHHHHHHHHaaaaaaaaaaxaxaaaaaaaaaa
1jdh_A_2781jdh   A278300GLQKMVALLNKTNVKFLAITTDCHHHHHHHGGG---HHHHHHHHHHaaaaaaaaaaxaxaaaaaaaaaa
1oc7_A_1031oc7   A107129SEVHTLAIPQITDPALRAAASAVHHHHHTTGGG---HHHHHHHHHHaaaaaaaaaabaxaaaaaaaaae
1rke_A_411rke   A5577VRVGKETVQTTEDQILKRDMPPAHHHHHTTTTT---HHHHHHHHHHaaaaaaaaaabaxaaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1oc7_A_1031oc7   A     DMFDIMETHYLFORMAMIDE N - 103
1oc7_A_1031oc7   A     DMFDIMETHYLFORMAMIDE R - 106
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1oc7_A_1031oc7   A DMFDMF BINDING SITE FOR CHAIN AR - 106

Clusters included in this Subclass
CLUSTER: HH.7.57
CLUSTER: HH.8.35