Information on SUBCLASS 3.5.5 |
Subclass Accession number: 2323
Subclass: 3.5.5 Type: HH alpha-alpha DB: ArchDB40 Image coordinates: Consensus coordinates: Conserved Annotation GO : GO:0005515 (>75 %) |
Number of loops: 4 Average sequence ID (%) : 8.7 +/- 9.9 Average RMSD (Å) : 0.975 +/- 0.206 Consensus geometry
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Consensus Sequence: | XpXpcXX |
(φψ)-conformation: | aabapaa |
Pattern: | x | x | x | x | x | x | [AIT] | [GILV] | x | [NQT] | [IKLT] | [EQT] | [DN] | x | x | [FKL] | x | [AER] | x | [ALMT] | [EPST] | x | [ACV] |
Conservation: | -1.300 | 0.058 | -0.462 | -0.345 | -0.345 | -0.144 | 0.341 | -0.504 | -0.743 | 1.381 | -0.663 | 0.909 | 3.317 | -0.425 | -0.982 | -0.144 | 0.797 | 0.272 | -1.380 | -0.027 | 0.053 | -0.504 | 0.840 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1dq3_A_303 | 1dq3 | A | 307 | 329 | LRFYELIGKNLQNEEKREKLEKV | HHHHHHTGGG-S-HHHHHHHHHH | aaaaaaaaaaxaxaaaaaaaaaa |
1jdh_A_278 | 1jdh | A | 278 | 300 | GLQKMVALLNKTNVKFLAITTDC | HHHHHHHGGG---HHHHHHHHHH | aaaaaaaaaaxaxaaaaaaaaaa |
1oc7_A_103 | 1oc7 | A | 107 | 129 | SEVHTLAIPQITDPALRAAASAV | HHHHHTTGGG---HHHHHHHHHH | aaaaaaaaaabaxaaaaaaaaae |
1rke_A_41 | 1rke | A | 55 | 77 | VRVGKETVQTTEDQILKRDMPPA | HHHHHTTTTT---HHHHHHHHHH | aaaaaaaaaabaxaaaaaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1oc7_A_103 | 1oc7 | A | DMFDIMETHYLFORMAMIDE | N - 103 |
1oc7_A_103 | 1oc7 | A | DMFDIMETHYLFORMAMIDE | R - 106 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1oc7_A_103 | 1oc7 | A | DMFDMF BINDING SITE FOR CHAIN A | R - 106 |
Clusters included in this Subclass |
CLUSTER: HH.7.57 |
CLUSTER: HH.8.35 |