Information on SUBCLASS 3.5.6 |
Subclass Accession number: 2324
Subclass: 3.5.6 Type: HH alpha-alpha DB: ArchDB40 Image coordinates: Consensus coordinates: |
Number of loops: 3 Average sequence ID (%) : 5.3 +/- 10.7 Average RMSD (Å) : 1.000 +/- 0.265 Consensus geometry
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Consensus Sequence: | pXpXphX |
(φψ)-conformation: | aabapaa |
Pattern: | x | [AEM] | [DHQ] | [AKL] | x | [ILV] | x | [LY] | [EMY] | x | [AKL] | x | [DKT] | [GR] | [EQT] | x | [DNT] | [FPW] | x | [CGV] | x | x | [ES] | x | x |
Conservation: | -1.267 | -0.532 | 1.086 | -0.679 | -0.679 | 2.115 | -0.679 | 1.359 | -0.385 | -1.561 | -0.679 | 0.281 | 0.056 | 1.164 | 0.792 | 0.056 | 1.086 | 0.056 | -0.679 | -0.679 | -1.120 | -0.238 | 2.045 | -0.679 | -0.238 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1aa7_A_90 | 1aa7 | A | 92 | 116 | NMDKAVKLYRKLKREITFHGAKEIS | HHHHHHHHHHHHTT--SHHHHHHHH | aaaaaaaaaaaaaaxabaaaaaaaa |
1f5m_A_21 | 1f5m | A | 25 | 49 | LEQLLLSYEGLSDGQVNWVCNLSNA | HHHHHHHHHHHHTT--BHHHHHHHH | aaaaaaaaaaaaaabapaaaaaaaa |
1o7j_A_300 | 1o7j | A | 300 | 324 | PAHARILLMLALTRTSDPKVIQEYF | HHHHHHHHHHHTTT---HHHHHHHH | aaaaaaaaaaaaaabaxaaaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1o7j_A_300 | 1o7j | A | GOLGLYCEROL | R - 304 |
1o7j_A_300 | 1o7j | A | GOLGLYCEROL | M - 308 |
1o7j_A_300 | 1o7j | A | EDO1,2-ETHANEDIOL | L - 311 |
1o7j_A_300 | 1o7j | A | EDO1,2-ETHANEDIOL | S - 315 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1aa7_A_90 | 1aa7 | A | S1RNA-BINDING SITE. | K - 95 |
1aa7_A_90 | 1aa7 | A | S1RNA-BINDING SITE. | K - 98 |
1aa7_A_90 | 1aa7 | A | S1RNA-BINDING SITE. | R - 101 |
1aa7_A_90 | 1aa7 | A | S1RNA-BINDING SITE. | K - 102 |
1aa7_A_90 | 1aa7 | A | S1RNA-BINDING SITE. | R - 105 |
Clusters included in this Subclass |
CLUSTER: HH.6.164 |