ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 3.7.1

Subclass Accession number: 233
Subclass: 3.7.1

Type: HE alpha-beta
DB: ArchDB40

Image coordinates:

Consensus coordinates:

Conserved Annotation
EC : 3.4 (>75 %)  3.4.25 (>75 %)  3.4.25.1
GO : GO:0004175 (>75 %)  GO:0008233 (>75 %)
SCOP : 56234 (>75 %)  56235 (>75 %)  56251 (>75 %)

Number of loops: 10

Average sequence ID (%) : 21.4 +/- 23.2
Average RMSD (Å) : 0.680 +/- 0.388

Consensus geometry

d (Å): 11

delta (°): 45-90

theta (°): 90-135

rho (°): 90-135

Consensus Sequence:	ppXXXXX
(φψ)-conformation:	aapppbb

Pattern:	[alv]	[EKTY]	[ADERS]	[ailv]	[eknqs]	[hknqrw]	[agkrs]	[DGNPSTV]	[ACFTV]	[ast]	x
Conservation:	0.479	2.259	0.595	-0.603	0.556	-0.698	-1.138	-0.991	0.240	0.188	-0.887

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1fx2_A_1075	1fx2	A	1075	1085	AEDRKQIDVTA	HHHHHT--EEE	aaaaaabbbbx
1g0u_A_22	1g0u	A	28	38	LTAVKQGVTSL	HHHHHTS--EE	aaaaaaxxxbb
1g0u_B_22	1g0u	B	28	38	LESISHAGTAI	HHHHHTS--EE	aaaaaaxpxbb
1g0u_C_22	1g0u	C	28	38	LEAVKRGTCAV	HHHHHHS--EE	aaaaaaxpxbb
1g0u_D_22	1g0u	D	28	38	LEAIKLGSTAI	HHHHHTS--EE	aaaaaaxpxbb
1g0u_E_22	1g0u	E	28	38	LEAIKQGSVTV	HHHHHTS--EE	aaaaaabxxbb
1g0u_F_22	1g0u	F	28	38	VKAVENGTTSI	HHHHHTS--EE	aaaaaaxpxbb
1h30_A_601	1h30	A	611	621	LERHLRSPVLT	HHHHHTS--EE	aaaaaabwbbx
1hyu_A_202	1hyu	A	204	214	AEALNKRDAYD	HHHHHTS--EE	aaaaaaxxxxa
1qho_A_180	1qho	A	180	190	RYEAQWKNFTD	HHHHHHSB-EE	aaaaaabxxbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1hyu_A_202	1hyu	A	FADFLAVIN-ADENINE DINUCLEOTIDE	V - 218
1qho_A_180	1qho	A	CACALCIUM ION	A - 183
1qho_A_180	1qho	A	CACALCIUM ION	Q - 184
1qho_A_180	1qho	A	CACALCIUM ION	W - 185
1qho_A_180	1qho	A	CACALCIUM ION	K - 186
1qho_A_180	1qho	A	ABDACARBOSE DERIVED HEXASACCHARIDE	F - 188
1qho_A_180	1qho	A	ABDACARBOSE DERIVED HEXASACCHARIDE	T - 189
1qho_A_180	1qho	A	ABDACARBOSE DERIVED HEXASACCHARIDE	D - 190

Clusters included in this Subclass

CLUSTER: HE.4.28