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Information on SUBCLASS 4.5.4
Subclass Accession number: 2380
Subclass: 4.5.4 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 22.7 +/- 16.6
Average RMSD (Å) : 0.667 +/- 0.231

Consensus geometry
d (Å): 13 delta (°): 90-135 theta (°): 90-135 rho (°): 180-225
Consensus Sequence: XXGXLXXp
(φψ)-conformation: aalappaa
Pattern: x[FL][FGY]x[AK][AIW][SV][AKR][G][EL][L][EGT][ADK][EHS][AQ][AL][AQ][AI]x[AL]x[ADS]
Conservation:-0.9680.607-0.173-0.7030.366-0.879-0.328-0.0843.449-0.3891.859-0.791-0.7030.0040.3460.0220.1480.022-0.6140.036-0.968-0.261
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1hzf_A_11431hzf   A11591180FLGEKASAGLLGAHAAAITAYAHHHHHHHHT---HHHHHHHHHHaaaaaaaavaxxaaaaaaaaaa
1khd_A_281khd   A3354QLFAAIVRGELEDSQLAAALISHHHHHHTTT-S-HHHHHHHHHHaaaaaaaavaxxaaaaaaaaaa
1rcw_A_251rcw   A2546TFYVKWSKGELTKEQLQAYAKDHHHHHHHTT---HHHHHHHHHHaaaaaaaavabxaaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1hzf_A_11431hzf   A     MSESELENOMETHIONINE L - 1169
1hzf_A_11431hzf   A     MSESELENOMETHIONINE G - 1170
1hzf_A_11431hzf   A     MSESELENOMETHIONINE A - 1171
1hzf_A_11431hzf   A     MSESELENOMETHIONINE A - 1174
1rcw_A_251rcw   A     MSESELENOMETHIONINE T - 25
1rcw_A_251rcw   A     MSESELENOMETHIONINE F - 26
1rcw_A_251rcw   A     MSESELENOMETHIONINE Y - 27
1rcw_A_251rcw   A     MSESELENOMETHIONINE V - 28
1rcw_A_251rcw   A     MSESELENOMETHIONINE Y - 43

Clusters included in this Subclass
CLUSTER: HH.5.260