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Information on SUBCLASS 4.17.1
Subclass Accession number: 2403
Subclass: 4.17.1 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0005524 (>75 %)  GO:0005525 (>75 %)  GO:0008168 (>75 %)  GO:0008757 (>75 %)  GO:0016462 (>75 %)  GO:0016741 (>75 %)  GO:0016817 (>75 %)  GO:0016818 (>75 %)  GO:0019001 (>75 %)  GO:0030554 (>75 %)  
SCOP : 47768 (>75 %)  47953 (>75 %)  47954 (>75 %)  47955 (>75 %)  53334 (>75 %)  53335 (>75 %)  75552 (>75 %)  75553 (>75 %)  75554 (>75 %)  
Number of loops: 4

Average sequence ID (%) : 6.4 +/- 8.5
Average RMSD (Å) : 0.600 +/- 0.216

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 45-90 rho (°): 180-225
Consensus Sequence: hhppppXh
(φψ)-conformation: aapaapaa
Pattern: xx[AERT]xx[ADNS]xx[GRS]xxxx
Conservation:0.8340.8540.384-1.385-1.0771.510-0.742-0.4201.591-0.9030.517-0.420-0.742
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1k87_A_5501k87   A557569LLENGANTSFVNRHHHHH-TTSHHHHaaaaaxaaxaaaa
1m66_A_2611m66   A265277QLTCSSELSRNFTHHHHT-TTSHHHHaaaaaxaaxaaaa
1qam_A_1291qam   A132144AKRLLNTKRSLALHHHHT-TTSHHHHaaaaaxaabaaaa
1qzz_A_1061qzz   A106118QRAWLDLNGAVSHHHHHH-TTSHHHHaaaaapaaxaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1k87_A_5501k87   A     LACLACTIC ACID Y - 552
1k87_A_5501k87   A     LACLACTIC ACID R - 555
1k87_A_5501k87   A     FADFLAVIN-ADENINE DINUCLEOTIDE R - 556
1k87_A_5501k87   A     1PEPENTAETHYLENE GLYCOL R - 556
1k87_A_5501k87   A     LACLACTIC ACID R - 556
1k87_A_5501k87   A     1PEPENTAETHYLENE GLYCOL L - 557
1k87_A_5501k87   A     FADFLAVIN-ADENINE DINUCLEOTIDE E - 559
1k87_A_5501k87   A     1PEPENTAETHYLENE GLYCOL N - 560
1k87_A_5501k87   A     1PEPENTAETHYLENE GLYCOL G - 561
1k87_A_5501k87   A     FADFLAVIN-ADENINE DINUCLEOTIDE A - 562
1k87_A_5501k87   A     FADFLAVIN-ADENINE DINUCLEOTIDE T - 564
1k87_A_5501k87   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL T - 564
1k87_A_5501k87   A     FADFLAVIN-ADENINE DINUCLEOTIDE S - 565
1k87_A_5501k87   A     FADFLAVIN-ADENINE DINUCLEOTIDE F - 566
1k87_A_5501k87   A     FADFLAVIN-ADENINE DINUCLEOTIDE V - 567
1k87_A_5501k87   A     1PEPENTAETHYLENE GLYCOL V - 567
1k87_A_5501k87   A     1PEPENTAETHYLENE GLYCOL N - 568
1qam_A_1291qam   A     ACTACETATE ION F - 131
1qam_A_1291qam   A     ACTACETATE ION R - 134
1qam_A_1291qam   A     ACTACETATE ION L - 135
1qam_A_1291qam   A     ACTACETATE ION R - 140
1qam_A_1291qam   A     ACTACETATE ION S - 141
1qam_A_1291qam   A     ACTACETATE ION L - 142
1qam_A_1291qam   A     ACTACETATE ION A - 143

Clusters included in this Subclass
CLUSTER: HH.4.89