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Information on SUBCLASS 4.26.1
Subclass Accession number: 2416
Subclass: 4.26.1 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : 1.2 (>75 %)  1.2.1 (>75 %)  1.2.1.3 (>75 %)  1.3 (>75 %)  1.3.99 (>75 %)  1.3.99.2
GO : GO:0003995 (>75 %)  GO:0004028 (>75 %)  GO:0004085 (>75 %)  GO:0016620 (>75 %)  GO:0016627 (>75 %)  GO:0016903 (>75 %)  
SCOP : 53719 (>75 %)  53720 (>75 %)  53721 (>75 %)  56644 (>75 %)  56645 (>75 %)  56646 (>75 %)  
 Number of loops: 4

Average sequence ID (%) : 16.7 +/- 16.5
Average RMSD (Å) : 0.950 +/- 0.387

Consensus geometry
d (Å): 15 delta (°): 90-135 theta (°): 90-135 rho (°): 135-180
Consensus Sequence: ppXXhPpX
(φψ)-conformation: aalpppaa
Pattern: [AFV][AMT][EGQ]xx[HKT][EKNS]xx[FLY][DP][KQRT]xx[ILV]x[EKRT][LMV]
Conservation:-0.584-0.3460.020-1.7970.257-0.395-0.0641.263-1.2591.1492.121-0.184-1.0800.0151.216-0.825-0.3030.796
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1buc_A_281buc   A2845VTERDHKGIYDKELIDELHHHHHHHT---HHHHHHHaaaaaaavxbxaaaaaaa
1e4m_M_2841e4m   M286303FMGPLTNGTYPQIMIDTVHHHHHHHSS--HHHHHHHaaaaaaavbxwaaaaaaa
1jqi_A_331jqi   A3350AAQLDKEHLFPTSQVKKMHHHHHHHT---HHHHHHHaaaaaaalxxxaaaaaaa
1r2j_A_161r2j   A1633AAEWDTSGELPRDLLVRLHHHHHHHT---HHHHHHHaaaaaaavbbxaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1e4m_M_2841e4m   M     NAGN-ACETYL-D-GLUCOSAMINE G - 288
1e4m_M_2841e4m   M     NAGN-ACETYL-D-GLUCOSAMINE N - 292
1e4m_M_2841e4m   M     FUCFUCOSE N - 292
1e4m_M_2841e4m   M     NAGN-ACETYL-D-GLUCOSAMINE G - 293
1e4m_M_2841e4m   M     NAGN-ACETYL-D-GLUCOSAMINE T - 294
1e4m_M_2841e4m   M     FUCFUCOSE T - 294
1e4m_M_2841e4m   M     NAGN-ACETYL-D-GLUCOSAMINE Y - 295
1e4m_M_2841e4m   M     FUCFUCOSE Y - 295
1e4m_M_2841e4m   M     NAGN-ACETYL-D-GLUCOSAMINE P - 296
1e4m_M_2841e4m   M     FUCFUCOSE P - 296
1e4m_M_2841e4m   M     NAGN-ACETYL-D-GLUCOSAMINE Q - 297
1e4m_M_2841e4m   M     FUCFUCOSE Q - 297
1e4m_M_2841e4m   M     MANALPHA-D-MANNOSE Q - 297
1e4m_M_2841e4m   M     NAGN-ACETYL-D-GLUCOSAMINE I - 300
1e4m_M_2841e4m   M     MANALPHA-D-MANNOSE I - 300
1e4m_M_2841e4m   M     MANALPHA-D-MANNOSE D - 301

Clusters included in this Subclass
CLUSTER: HH.3.190