ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 5.13.2

Subclass Accession number: 2460
Subclass: 5.13.2

Type: HH alpha-alpha
DB: ArchDB40

Image coordinates:

Consensus coordinates:

Conserved Annotation
EC : 1.3 (>50 %)  1.3.99 (>50 %)  1.3.99.1
GO : GO:0000104 (>50 %)  GO:0016627 (>50 %)
SCOP : 51904 (>75 %)  51905 (>75 %)  51934 (>75 %)

Number of loops: 3

Average sequence ID (%) : 23.4 +/- 16.5
Average RMSD (Å) : 0.400 +/- 0.000

Consensus geometry

d (Å): 13

delta (°): 90-135

theta (°): 135-180

rho (°): 315-360

Consensus Sequence:	hXXXhXDXX
(φψ)-conformation:	aallappaa

Pattern:	x	[DE]	x	[HM]	[FV]	[EM]	[D]	[T]	[LMV]	[IK]	[AG]	[GS]	[ADQ]	x	[GI]	[CN]	[D]	[PQR]	x	[ALV]	[AV]	[EKR]	[FMV]	[FLV]	[ASV]	[NS]	[HNT]	[AS]	[KPR]	[DKS]	[ACS]	[IV]	[DQR]	[EW]	[LM]	[AIT]	[AD]
Conservation:	-1.511	1.276	-0.758	0.549	0.184	-0.384	2.703	1.974	0.029	-0.788	0.517	0.491	-0.943	-0.781	-1.259	0.611	2.703	-0.619	-0.943	-0.700	-0.103	0.029	-0.457	-0.538	-0.862	0.425	-0.295	0.243	-0.457	-0.619	-0.295	0.908	-0.538	1.061	0.669	-0.943	-0.575

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1chu_A_60	1chu	A	63	99	IDSHVEDTLIAGAGICDRHAVEFVASNARSCVQWLID	HHHHHHHHHHHTTT---HHHHHHHHHHHHHHHHHHHH	aaaaaaaaaaaalgapxaaaaaaaaaaaaaaaaaaaa
1q9i_A_189	1q9i	A	189	225	PELMFEDTMKGGQNINDPALVKVLSSHSKDSVDWMTA	HHHHHHHHHHHTTT-S-HHHHHHHHHHHHHHHHHHHH	aaaaaaaaaaaavlapxaaaaaaaaaaaaaaaaaaaa
1qla_A_66	1qla	A	66	102	EDLHFMDTVKGSDWGCDQKVARMFVNTAPKAIRELAA	HHHHHHHHHHHTTT-S-HHHHHHHHHHHHHHHHHHHH	aaaaaaaaaaaalvaxxaaaaaaaaaaaaaaaaaaaa

Clusters included in this Subclass

CLUSTER: HH.5.214