ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 0.1.17

Subclass Accession number: 2567
Subclass: 0.1.17

PSSM

Type: EH beta-alpha
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 10

Average sequence ID (%) : 33.8 +/- 29.8
Average RMSD (Å) : 0.350 +/- 0.217

Consensus geometry

d (Å): 13

delta (°): 45-90

theta (°): 0-45

rho (°): 180-225

Consensus Sequence:	pphp
(φψ)-conformation:	bbaa

Pattern:	[FGLWY]	[GILV]	[agstv]	[fy]	[DPQ]	[DNST]	x	[EKRS]	[nsy]	[AFLV]
Conservation:	-0.563	-0.144	-1.167	2.057	1.052	0.352	-0.829	0.445	-0.940	-0.264

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1d2k_A_350	1d2k	A	351	360	LISYDTVKIA	EEE---HHHH	bbxbxxaaaa
1e9l_A_332	1e9l	A	333	342	WVGYDNVRSF	EEE---HHHH	bbbbbbaaaa
1edq_A_511	1edq	A	512	521	LITFDDARSV	EEE---HHHH	bbbbbbaaaa
1goi_A_375	1goi	A	376	385	FVTYDDAESF	EEE---HHHH	bbbbbbaaaa
1hjx_A_324	1hjx	A	325	334	WVGYDDQESV	EEE---HHHH	bbxbbbaaaa
1hkk_A_330	1hkk	A	331	340	WVGFDDVESF	EEE---HHHH	bbxbbbaaaa
1itx_A_406	1itx	A	406	415	FISYDDAESV	EEE---HHHH	bbxbbbaaaa
1jy1_A_437	1jy1	A	438	447	YLIYPSVENV	EEE--BHHHH	bbbbpxaaaa
1lt8_A_117	1lt8	A	120	129	GGVSQTPSYL	EEE---HHHH	xbbbxbaaaa
1qzo_A_303	1qzo	A	304	313	WVAYDDQESV	EEE---HHHH	bbxbbbaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1itx_A_406	1itx	A	GOLGLYCEROL	F - 406
1itx_A_406	1itx	A	GOLGLYCEROL	E - 413
1itx_A_406	1itx	A	GOLGLYCEROL	Y - 417
1jy1_A_437	1jy1	A	MSESELENOMETHIONINE	L - 437
1jy1_A_437	1jy1	A	MSESELENOMETHIONINE	P - 442
1jy1_A_437	1jy1	A	MSESELENOMETHIONINE	S - 443
1jy1_A_437	1jy1	A	MSESELENOMETHIONINE	N - 446
1jy1_A_437	1jy1	A	MSESELENOMETHIONINE	V - 447

Clusters included in this Subclass

CLUSTER: EH.3.96

CLUSTER: EH.4.58