ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 1.1.19

Subclass Accession number: 2648
Subclass: 1.1.19

PSSM

Type: EH beta-alpha
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 15

Average sequence ID (%) : 8.0 +/- 15.4
Average RMSD (Å) : 0.507 +/- 0.149

Consensus geometry

d (Å): 7

delta (°): 0-45

theta (°): 0-45

rho (°): 135-180

Consensus Sequence:	XXpXX
(φψ)-conformation:	bbpaa

Pattern:	x	[gikltv]	x	[adenqt]	x	x	x	x	x
Conservation:	-0.045	0.507	0.319	2.002	-1.427	-0.810	-0.814	0.482	-0.214

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1b93_A_136	1b93	A	139	147	LIPDYQRYL	EEE-HHHHH	xbxxaaaaa
1dfm_A_46	1dfm	A	46	54	LIFDPVGTN	EEE-HHHHH	xbpbaaaaa
1e12_A_101	1e12	A	102	110	VRSQWGRYL	EEE-HHHHH	bxbxaaaaa
1e43_A_282	1e43	A	282	290	SVFDVPLHF	EEE-HHHHH	xbxxaaaaa
1f2d_A_18	1f2d	A	18	26	ISNLNRLSQ	EEE-HHHHH	bxbxaaaaa
1g5a_A_347	1g5a	A	347	355	IGYNPLQMA	EEE-HHHHH	bbpbaaaaa
1hvx_A_285	1hvx	A	285	293	SLFDAPLHN	EEE-HHHHH	xbxxaaaaa
1hx0_A_252	1hx0	A	252	260	RVTEFKYGA	EEE-HHHHH	xbpbaaaaa
1j1u_A_60	1j1u	A	64	72	ILLADLHAY	EEE-HHHHH	bxxxaaaaa
1jae_*_241	1jae	-	241	249	CVLEFQFGV	EEE-HHHHH	xbxxaaaaa
1jnr_A_332	1jnr	A	332	340	IYMHTEEAL	EEE-HHHHH	xbxxaaaaa
1m7x_A_479	1m7x	A	479	487	YKWNLGWMH	EEE-HHHHH	bbxxaaaaa
1n3l_A_68	1n3l	A	71	79	ILFADLHAY	EEE-HHHHH	bxxxaaaaa
1tdt_A_52	1tdt	A	53	61	WVTHQWLKK	EEE-HHHHH	xbbxaaaaa
1xyn_*_135	1xyn	-	135	143	GTVTVQNHF	EEE-HHHHH	ebbxaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1dfm_A_46	1dfm	A	MSESELENOMETHIONINE	F - 48
1dfm_A_46	1dfm	A	MSESELENOMETHIONINE	G - 52
1dfm_A_46	1dfm	A	MSESELENOMETHIONINE	T - 53
1dfm_A_46	1dfm	A	CACALCIUM ION	N - 54
1dfm_A_46	1dfm	A	MSESELENOMETHIONINE	Y - 56
1dfm_A_46	1dfm	A	CACALCIUM ION	Y - 56
1dfm_A_46	1dfm	A	MSESELENOMETHIONINE	I - 57
1e12_A_101	1e12	A	RETRETINAL	Y - 109
1e12_A_101	1e12	A	RETRETINAL	W - 112
1e12_A_101	1e12	A	RETRETINAL	S - 115
1e12_A_101	1e12	A	RETRETINAL	T - 116
1e12_A_101	1e12	A	RETRETINAL	I - 119
1hx0_A_252	1hx0	A	PCAPYROGLUTAMIC ACID	R - 252
1hx0_A_252	1hx0	A	CACALCIUM ION	R - 252
1hx0_A_252	1hx0	A	MALMALTOSE	K - 261
1j1u_A_60	1j1u	A	TYRTYROSINE	L - 65
1j1u_A_60	1j1u	A	TYRTYROSINE	A - 67
1j1u_A_60	1j1u	A	TYRTYROSINE	H - 70
1jae_*_241	1jae	*	5HPPYROGLUTAMIC ACID	C - 241
1jae_*_241	1jae	*	CACALCIUM ION	C - 241

Clusters included in this Subclass

CLUSTER: EH.0.18

CLUSTER: EH.1.123

CLUSTER: EH.1.69

CLUSTER: EH.2.42