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Information on SUBCLASS 3.3.8
Subclass Accession number: 2910
Subclass: 3.3.8 PSSM
Type: EH beta-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 5

Average sequence ID (%) : 18.1 +/- 23.3
Average RMSD (Å) : 0.780 +/- 0.259

Consensus geometry
d (Å): 13 delta (°): 45-90 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: IXhXphX
(φψ)-conformation: bbpabaa
Pattern: [AILV][CLP][ATV]x[ANPTV][ILV][adk]x[aflp][ADEK][dhy][ACI][GLPV][py][elm][AIK][DEKY][AKT][ALW][av][AEGK]
Conservation:1.0770.0450.9131.147-1.0382.517-0.863-0.537-1.9270.459-0.5430.470-1.6820.480-0.109-0.303-0.0110.651-0.130-0.266-0.352
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1fq0_A_171fq0   A1838VPVIVVKKLEHAVPMAKALVAEEEE---SGGGHHHHHHHHHHbxxxbxabaaaaaaaaaaaaa
1gca_*_621gca   -6282ALAINLVDPAAAGTVIEKARGEEEE--SSGGGHHHHHHHHHHbbbbbxabaaaaaaaaaaaaa
1mxs_A_291mxs   A3050LPVITIAREEDILPLADALAAEEEE--S-GGGHHHHHHHHHHbxxxbxabaaaaaaaaaaaaa
1q92_A_1241q92   A128148ICTSPIKMFKYCPYEKYAWVEEEE---S--SSHHHHHHHHHHxbbbxxaxaaaaaaaaaaaaa
1vhc_A_171vhc   A1838VPVIALDNADDILPLADTLAKEEEE--SSGGGHHHHHHHHHHbwbbbbabaaaaaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1fq0_A_171fq0   A     CITCITRIC ACID V - 20
1gca_*_621gca   *     GALD-GALACTOSE N - 66
1gca_*_621gca   *     CACALCIUM ION N - 66
1gca_*_621gca   *     GALD-GALACTOSE L - 67
1gca_*_621gca   *     CACALCIUM ION L - 67
1q92_A_1241q92   A     DRM{[(1R,2S)-2-(2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL) CYCLOPENTYL]OXY}METHYLPHOSPHONIC ACID C - 129
1q92_A_1241q92   A     DRM{[(1R,2S)-2-(2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL) CYCLOPENTYL]OXY}METHYLPHOSPHONIC ACID T - 130
1q92_A_1241q92   A     DRM{[(1R,2S)-2-(2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL) CYCLOPENTYL]OXY}METHYLPHOSPHONIC ACID S - 131
1q92_A_1241q92   A     DRM{[(1R,2S)-2-(2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL) CYCLOPENTYL]OXY}METHYLPHOSPHONIC ACID P - 132
1q92_A_1241q92   A     DRM{[(1R,2S)-2-(2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL) CYCLOPENTYL]OXY}METHYLPHOSPHONIC ACID I - 133
1q92_A_1241q92   A     DRM{[(1R,2S)-2-(2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL) CYCLOPENTYL]OXY}METHYLPHOSPHONIC ACID C - 139
1q92_A_1241q92   A     DRM{[(1R,2S)-2-(2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL) CYCLOPENTYL]OXY}METHYLPHOSPHONIC ACID K - 143

Clusters included in this Subclass
CLUSTER: EH.6.127
CLUSTER: EH.7.94