Information on SUBCLASS 5.8.5 |
Subclass Accession number: 3230
Subclass: 5.8.5 Type: EH beta-alpha DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 3 Average sequence ID (%) : 9.3 +/- 13.3 Average RMSD (Å) : 1.500 +/- 0.173 Consensus geometry
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Consensus Sequence: | hXhXpXXhX |
(φψ)-conformation: | bbaaabpaa |
Pattern: | [IMT] | [AGR] | [FY] | [FGV] | [AFP] | [GST] | [LP] | x | [DQY] | x | [PRT] | [FIP] | x | [DE] | [AVY] | [LW] | [DER] | [AEQ] | [AV] | x | x | [ALV] | [EG] | [EKL] | [IV] |
Conservation: | -0.152 | -0.436 | 3.017 | -1.099 | -1.005 | -0.057 | 0.579 | -0.531 | -0.342 | -0.531 | -0.436 | -1.005 | -0.057 | 1.928 | -0.436 | 0.528 | 0.227 | 0.037 | 0.565 | -1.005 | -1.005 | -0.152 | 0.356 | -0.720 | 1.732 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1qz9_A_373 | 1qz9 | A | 374 | 398 | MRFGFTPLYTTFTEVWDAVQILGEI | EEEE--TTT--HHHHHHHHHHHHHH | bbbxbbaaaxxaaaaaaaaaaaaaa |
1rhc_A_4 | 1rhc | A | 5 | 29 | IGYFASLEQYRPMDALEQAIRAEKV | EEEE--TTTS-HHHHHHHHHHHHHH | bbbbbxaaabxaaaaaaaaaaaaaa |
1uf3_A_66 | 1uf3 | A | 66 | 90 | TAYVPGPQDAPIWEYLREAANVELV | EEEE--TTS-SHHHHHHHHHHHHHH | bbbbxbaaabwaaaaaaaaaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1qz9_A_373 | 1qz9 | A | PLPPYRIDOXAL-5'-PHOSPHATE | R - 375 |
1qz9_A_373 | 1qz9 | A | P3G3,6,9,12,15-PENTAOXAHEPTADECANE | R - 375 |
1rhc_A_4 | 1rhc | A | F42COENZYME F420 | F - 8 |
1rhc_A_4 | 1rhc | A | ACNACETONE | F - 8 |
1rhc_A_4 | 1rhc | A | F42COENZYME F420 | E - 12 |
1rhc_A_4 | 1rhc | A | ACNACETONE | E - 12 |
1uf3_A_66 | 1uf3 | A | MSESELENOMETHIONINE | T - 66 |
1uf3_A_66 | 1uf3 | A | CACALCIUM ION | T - 66 |
1uf3_A_66 | 1uf3 | A | MSESELENOMETHIONINE | A - 67 |
1uf3_A_66 | 1uf3 | A | CACALCIUM ION | A - 67 |
1uf3_A_66 | 1uf3 | A | MSESELENOMETHIONINE | Y - 68 |
1uf3_A_66 | 1uf3 | A | CACALCIUM ION | Y - 68 |
1uf3_A_66 | 1uf3 | A | MSESELENOMETHIONINE | Q - 73 |
1uf3_A_66 | 1uf3 | A | CACALCIUM ION | Q - 73 |
1uf3_A_66 | 1uf3 | A | MSESELENOMETHIONINE | D - 74 |
1uf3_A_66 | 1uf3 | A | CACALCIUM ION | D - 74 |
1uf3_A_66 | 1uf3 | A | CACALCIUM ION | A - 75 |
1uf3_A_66 | 1uf3 | A | CACALCIUM ION | P - 76 |
1uf3_A_66 | 1uf3 | A | CACALCIUM ION | W - 78 |
1uf3_A_66 | 1uf3 | A | CACALCIUM ION | E - 79 |
1uf3_A_66 | 1uf3 | A | MSESELENOMETHIONINE | V - 87 |
1uf3_A_66 | 1uf3 | A | MSESELENOMETHIONINE | E - 88 |
1uf3_A_66 | 1uf3 | A | CACALCIUM ION | E - 88 |
Clusters included in this Subclass |
CLUSTER: EH.6.191 |