ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 5.40.1

Subclass Accession number: 3277
Subclass: 5.40.1

PSSM

Type: EH beta-alpha
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 5

Average sequence ID (%) : 19.4 +/- 16.7
Average RMSD (Å) : 0.860 +/- 0.385

Consensus geometry

d (Å): 17

delta (°): 0-45

theta (°): 45-90

rho (°): 135-180

Consensus Sequence:	hXhphhpXp
(φψ)-conformation:	bbpppppaa

Pattern:	[ILV]	[aep]	[FIL]	[DEPS]	[AFP]	[LPY]	[DT]	x	[ADEK]	[egqr]	x	[EFK]	[deq]	[IL]	[ilv]	[ekr]
Conservation:	1.704	-0.595	1.027	0.253	-0.675	-0.580	1.062	-1.091	-0.189	-1.434	-0.700	0.032	-0.415	2.147	-0.265	-0.277

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1fnn_A_186	1fnn	A	187	202	IRFSPYTKDQIFDILL	EE----BHHHHHHHHH	bbbxpxxaaaaaaaaa
1in4_A_173	1in4	A	175	190	LELDFYTVKELKEIIK	EE-----HHHHHHHHH	bxxbpxxaaaaaaaaa
1is1_A_97	1is1	A	100	115	VPLPPLTEERRKDLVK	EE-----HHHHHHHHH	bxxxxxxaaaaaaaaa
1ixz_A_319	1ixz	A	321	336	IAIDAPDVKGREQILR	EE--S--HHHHHHHHH	bxbxppxaaaaaaaaa
1poi_B_235	1poi	B	235	250	VELEAPDPAVIKLIRE	EE-----HHHHHHHHH	bxxbpxpaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1fnn_A_186	1fnn	A	ADPADENOSINE-5'-DIPHOSPHATE	F - 189
1fnn_A_186	1fnn	A	ADPADENOSINE-5'-DIPHOSPHATE	Y - 192
1fnn_A_186	1fnn	A	ADPADENOSINE-5'-DIPHOSPHATE	I - 200
1fnn_A_186	1fnn	A	ADPADENOSINE-5'-DIPHOSPHATE	D - 203
1fnn_A_186	1fnn	A	ADPADENOSINE-5'-DIPHOSPHATE	R - 204
1in4_A_173	1in4	A	ADPADENOSINE-5'-DIPHOSPHATE	L - 177
1in4_A_173	1in4	A	ADPADENOSINE-5'-DIPHOSPHATE	Y - 180
1in4_A_173	1in4	A	ADPADENOSINE-5'-DIPHOSPHATE	I - 188
1in4_A_173	1in4	A	ADPADENOSINE-5'-DIPHOSPHATE	R - 191
1ixz_A_319	1ixz	A	HGMERCURY (II) ION	I - 334
1ixz_A_319	1ixz	A	HGMERCURY (II) ION	I - 337
1ixz_A_319	1ixz	A	HGMERCURY (II) ION	H - 338

Clusters included in this Subclass

CLUSTER: EH.6.125