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Information on SUBCLASS 6.40.1
Subclass Accession number: 3380
Subclass: 6.40.1 PSSM
Type: EH beta-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 5

Average sequence ID (%) : 28.7 +/- 23.6
Average RMSD (Å) : 0.440 +/- 0.114

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 0-45 rho (°): 315-360
Consensus Sequence: phpchXHhhh
(φψ)-conformation: bbplbpabaa
Pattern: [AET][FLMY][hlv][STV][FIV][EKRY][DGN][AC][GS][H][FLM][LTV][MP][FTVW][DEH]
Conservation:-0.391-0.180-1.209-0.222-0.008-0.594-0.1430.4960.1953.269-0.005-0.327-0.093-0.9110.122
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ac5_*_4381ac5   -439453TFVSVYNASHMVPFDEEEEETT--SSHHHHbbbbxxvbxabaaaa
1ehy_A_2651ehy   A266280TMETIEDCGHFLMVEEEEEETT--S-HHHHbbbbbxvbxabaaaa
1gxs_B_4041gxs   B405419TYVTVRGAGHLVPVHEEEEETT--SSHHHHbbbbbxvbxaxaaaa
1ivy_A_4191ivy   A420434AFLTIKGAGHMVPTDEEEEETT--SSHHHHbbbbbxvxxabaaaa
1mtz_A_2621mtz   A262276ELHVFRDCSHLTMWEEEEEETT--S-HHHHbbbbxxvbFaxaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ac5_*_4381ac5   *     NAGN-ACETYL-D-GLUCOSAMINE Y - 444
1ac5_*_4381ac5   *     NAGN-ACETYL-D-GLUCOSAMINE N - 445
1gxs_B_4041gxs   B     DKADECANOIC ACID H - 414
1gxs_B_4041gxs   B     DKADECANOIC ACID L - 415
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1ac5_*_4381ac5   * 448MEMBER OF CATALYTIC TRIAD.H - 448
1gxs_B_4041gxs   B DK1DKA BINDING SITE FOR DIMER ABH - 414
1gxs_B_4041gxs   B DK1DKA BINDING SITE FOR DIMER ABL - 415
1ivy_A_4191ivy   A CATCATALYTIC TRIAD SERINE CARBOXYPEPTIDASE.H - 429

Clusters included in this Subclass
CLUSTER: EH.5.140