ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 9.25.1

Subclass Accession number: 3541
Subclass: 9.25.1

Type: EH beta-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Conserved Annotation
GO : GO:0003989 (>75 %) GO:0004075 (>75 %) GO:0016421 (>75 %) GO:0016741 (>50 %) GO:0016743 (>50 %) GO:0016874 (>75 %) GO:0016879 (>75 %) GO:0016885 (>75 %) GO:0047154 (>50 %)
SCOP : 52095 (>75 %) 52096 (>75 %) 89572 (>75 %)

Number of loops: 3

Average sequence ID (%) : 20.6 +/- 16.2
Average RMSD (Å) : 0.367 +/- 0.058

Consensus geometry

d (Å): 15

delta (°): 45-90

theta (°): 135-180

rho (°): 225-270

Consensus Sequence:	pphphXXGXhcXp
(φψ)-conformation:	pbaablllppbaa

Pattern:	[R]	[PQS]	[FV]	x	[AIV]	[AV]	[AS]	[NQ]	[DQ]	[FIP]	[ST]	[FV]	[KM]	x	[G]	[CS]	[AFL]	[DG]	x	[NQT]	[AEQ]	[DS]	[DET]	[FK]	[AFV]	[ANV]	[EK]	[FTV]	[MTV]	[EN]	[FQY]	[AC]	x	x
Conservation:	2.312	-0.436	0.033	-1.269	-0.103	0.207	0.546	0.939	0.901	-1.186	0.840	0.033	0.247	-1.269	3.062	0.320	-0.769	0.653	-1.269	-0.270	-0.270	0.377	-0.103	-0.345	-0.769	-1.103	0.936	-0.686	-0.270	0.687	-0.103	0.664	-1.519	-1.019

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1on3_A_327	1on3	A	327	360	RSVGIVANQPSVMSGCLDINASDKAAEFVNFCDS	EEEEEEEE-TTSGGG-B-HHHHHHHHHHHHHHHH	xxbbbbbxbaabllvpxbaaaaaaaaaaaaaaaa
1on3_A_96	1on3	A	96	129	RPVHAASQDFTVMGGSAGETQSTKVVETMEQALL	EEEEEEEE-TTTGGG-B-HHHHHHHHHHHHHHHH	xwbbbbbxbaabllvpxxaaaaaaaaaaaaaaaa
1uyr_A_1580	1uyr	A	1580	1613	RQFVVVANDITFKIGSFGPQEDEFFNKVTEYARK	EEEEEEEE-TTSGGG-B-HHHHHHHHHHHHHHHH	bbbbbbbxbaaxllvxxbaaaaaaaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1on3_A_96	1on3	A	MCAMETHYLMALONYL-COENZYME A	F - 105
1on3_A_96	1on3	A	MCAMETHYLMALONYL-COENZYME A	M - 108
1on3_A_96	1on3	A	MCAMETHYLMALONYL-COENZYME A	G - 109
1on3_A_96	1on3	A	MCAMETHYLMALONYL-COENZYME A	G - 110
1on3_A_96	1on3	A	MCAMETHYLMALONYL-COENZYME A	S - 111
1on3_A_96	1on3	A	MCAMETHYLMALONYL-COENZYME A	A - 112
1on3_A_327	1on3	A	CDCADMIUM ION	I - 345
1on3_A_327	1on3	A	CDCADMIUM ION	D - 349

Clusters included in this Subclass